MotifZN561.H12INVITRO.0.P.D
Gene (human)ZNF561
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length25
ConsensusvvbbnSdGCMGARRRSSbvSnbbYb
GC content61.76%
Information content (bits; total / per base)14.993 / 0.6
Data sourcesChIP-Seq
Aligned words662

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.893 0.914 0.828 0.856 0.815 0.836 5.6 6.042 155.989 166.77
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF562-like {2.3.3.45} (TFClass)
TFClass IDTFClass: 2.3.3.45.3
HGNCHGNC:28684
MGI
EntrezGene (human)GeneID:93134
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN561_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q8N587
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01310.0116.0152.084.0
0288.0345.0177.052.0
0375.0198.099.0290.0
0495.0137.0125.0305.0
0585.085.0177.0315.0
0644.0433.0153.032.0
07149.072.096.0345.0
0827.013.0617.05.0
0920.0607.031.04.0
10460.0117.042.043.0
112.09.0648.03.0
12519.028.0107.08.0
13479.033.0144.06.0
14442.039.0149.032.0
15101.071.0454.036.0
1652.067.0505.038.0
1732.0147.0440.043.0
1840.0164.0153.0305.0
19116.0197.0298.051.0
2035.0481.096.050.0
21123.0234.0101.0204.0
2270.0328.0144.0120.0
2350.0334.096.0182.0
2422.0384.077.0179.0
2569.0371.0131.091.0
PFM
ACGT
010.4680.1750.230.127
020.1330.5210.2670.079
030.1130.2990.150.438
040.1440.2070.1890.461
050.1280.1280.2670.476
060.0660.6540.2310.048
070.2250.1090.1450.521
080.0410.020.9320.008
090.030.9170.0470.006
100.6950.1770.0630.065
110.0030.0140.9790.005
120.7840.0420.1620.012
130.7240.050.2180.009
140.6680.0590.2250.048
150.1530.1070.6860.054
160.0790.1010.7630.057
170.0480.2220.6650.065
180.060.2480.2310.461
190.1750.2980.450.077
200.0530.7270.1450.076
210.1860.3530.1530.308
220.1060.4950.2180.181
230.0760.5050.1450.275
240.0330.580.1160.27
250.1040.560.1980.137
PWM
ACGT
010.623-0.351-0.084-0.669
02-0.6230.730.067-1.137
03-0.780.178-0.5070.557
04-0.548-0.187-0.2780.607
05-0.657-0.6570.0670.639
06-1.2980.956-0.078-1.604
07-0.104-0.82-0.5380.73
08-1.764-2.4361.309-3.228
09-2.0451.292-1.634-3.392
101.016-0.343-1.343-1.32
11-3.831-2.7561.358-3.588
121.136-1.73-0.431-2.854
131.056-1.574-0.138-3.087
140.976-1.414-0.104-1.604
15-0.488-0.8331.003-1.491
16-1.137-0.891.109-1.439
17-1.604-0.1170.972-1.32
18-1.39-0.009-0.0780.607
19-0.3510.1730.584-1.156
20-1.5181.061-0.538-1.175
21-0.2930.344-0.4880.207
22-0.8470.679-0.138-0.318
23-1.1750.697-0.5380.094
24-1.9560.836-0.7540.078
25-0.8610.802-0.231-0.59
Standard thresholds
P-value Threshold
0.001 3.43816
0.0005 4.46841
0.0001 6.64141