ZN561.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN561.H12INVITRO.0.P.D
Gene (human)	ZNF561 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	25
Consensus	vvbbnSdGCMGARRRSSbvSnbbYb
GC content	61.76%
Information content (bits; total / per base)	14.993 / 0.6
Data sources	ChIP-Seq
Aligned words	662

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.893	0.914	0.828	0.856	0.815	0.836	5.6	6.042	155.989	166.77

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF562-like {2.3.3.45} (TFClass)
TFClass ID	TFClass: 2.3.3.45.3
HGNC	HGNC:28684
MGI
EntrezGene (human)	GeneID:93134 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN561_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N587 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN561.H12INVITRO.0.P.D.pcm
PWM	ZN561.H12INVITRO.0.P.D.pwm
PFM	ZN561.H12INVITRO.0.P.D.pfm
Alignment	ZN561.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN561.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN561.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN561.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN561.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN561.H12INVITRO.0.P.D_homer_format_0.001.txt ZN561.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN561.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	310.0	116.0	152.0	84.0
02	88.0	345.0	177.0	52.0
03	75.0	198.0	99.0	290.0
04	95.0	137.0	125.0	305.0
05	85.0	85.0	177.0	315.0
06	44.0	433.0	153.0	32.0
07	149.0	72.0	96.0	345.0
08	27.0	13.0	617.0	5.0
09	20.0	607.0	31.0	4.0
10	460.0	117.0	42.0	43.0
11	2.0	9.0	648.0	3.0
12	519.0	28.0	107.0	8.0
13	479.0	33.0	144.0	6.0
14	442.0	39.0	149.0	32.0
15	101.0	71.0	454.0	36.0
16	52.0	67.0	505.0	38.0
17	32.0	147.0	440.0	43.0
18	40.0	164.0	153.0	305.0
19	116.0	197.0	298.0	51.0
20	35.0	481.0	96.0	50.0
21	123.0	234.0	101.0	204.0
22	70.0	328.0	144.0	120.0
23	50.0	334.0	96.0	182.0
24	22.0	384.0	77.0	179.0
25	69.0	371.0	131.0	91.0

PFM

	A	C	G	T
01	0.468	0.175	0.23	0.127
02	0.133	0.521	0.267	0.079
03	0.113	0.299	0.15	0.438
04	0.144	0.207	0.189	0.461
05	0.128	0.128	0.267	0.476
06	0.066	0.654	0.231	0.048
07	0.225	0.109	0.145	0.521
08	0.041	0.02	0.932	0.008
09	0.03	0.917	0.047	0.006
10	0.695	0.177	0.063	0.065
11	0.003	0.014	0.979	0.005
12	0.784	0.042	0.162	0.012
13	0.724	0.05	0.218	0.009
14	0.668	0.059	0.225	0.048
15	0.153	0.107	0.686	0.054
16	0.079	0.101	0.763	0.057
17	0.048	0.222	0.665	0.065
18	0.06	0.248	0.231	0.461
19	0.175	0.298	0.45	0.077
20	0.053	0.727	0.145	0.076
21	0.186	0.353	0.153	0.308
22	0.106	0.495	0.218	0.181
23	0.076	0.505	0.145	0.275
24	0.033	0.58	0.116	0.27
25	0.104	0.56	0.198	0.137

PWM

	A	C	G	T
01	0.623	-0.351	-0.084	-0.669
02	-0.623	0.73	0.067	-1.137
03	-0.78	0.178	-0.507	0.557
04	-0.548	-0.187	-0.278	0.607
05	-0.657	-0.657	0.067	0.639
06	-1.298	0.956	-0.078	-1.604
07	-0.104	-0.82	-0.538	0.73
08	-1.764	-2.436	1.309	-3.228
09	-2.045	1.292	-1.634	-3.392
10	1.016	-0.343	-1.343	-1.32
11	-3.831	-2.756	1.358	-3.588
12	1.136	-1.73	-0.431	-2.854
13	1.056	-1.574	-0.138	-3.087
14	0.976	-1.414	-0.104	-1.604
15	-0.488	-0.833	1.003	-1.491
16	-1.137	-0.89	1.109	-1.439
17	-1.604	-0.117	0.972	-1.32
18	-1.39	-0.009	-0.078	0.607
19	-0.351	0.173	0.584	-1.156
20	-1.518	1.061	-0.538	-1.175
21	-0.293	0.344	-0.488	0.207
22	-0.847	0.679	-0.138	-0.318
23	-1.175	0.697	-0.538	0.094
24	-1.956	0.836	-0.754	0.078
25	-0.861	0.802	-0.231	-0.59

Standard thresholds

P-value	Threshold
0.001	3.43816
0.0005	4.46841
0.0001	6.64141