MotifZN560.H12INVIVO.0.P.C
Gene (human)ZNF560
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length23
ConsensusCCACTGCACTCCAGCCTGGGYRA
GC content64.84%
Information content (bits; total / per base)28.225 / 1.227
Data sourcesChIP-Seq
Aligned words513

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (6) 0.828 0.832 0.698 0.715 0.908 0.937 15.018 15.709 114.77 177.398
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.177
HGNCHGNC:26484
MGI
EntrezGene (human)GeneID:147741
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN560_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q96MR9
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0117.0451.024.021.0
0211.0472.013.017.0
03424.042.027.020.0
0410.0396.014.093.0
0514.040.019.0440.0
0623.019.0457.014.0
077.0448.022.036.0
08439.033.018.023.0
0910.0459.022.022.0
1015.041.018.0439.0
1111.0468.013.021.0
129.0472.07.025.0
13449.019.022.023.0
1415.025.0466.07.0
1514.0464.021.014.0
165.0474.08.026.0
1718.023.010.0462.0
1825.025.0449.014.0
1927.022.0447.017.0
2033.035.0430.015.0
2126.0303.044.0140.0
22206.032.0268.07.0
23430.043.026.014.0
PFM
ACGT
010.0330.8790.0470.041
020.0210.920.0250.033
030.8270.0820.0530.039
040.0190.7720.0270.181
050.0270.0780.0370.858
060.0450.0370.8910.027
070.0140.8730.0430.07
080.8560.0640.0350.045
090.0190.8950.0430.043
100.0290.080.0350.856
110.0210.9120.0250.041
120.0180.920.0140.049
130.8750.0370.0430.045
140.0290.0490.9080.014
150.0270.9040.0410.027
160.010.9240.0160.051
170.0350.0450.0190.901
180.0490.0490.8750.027
190.0530.0430.8710.033
200.0640.0680.8380.029
210.0510.5910.0860.273
220.4020.0620.5220.014
230.8380.0840.0510.027
PWM
ACGT
01-1.9451.249-1.625-1.75
02-2.3361.294-2.188-1.945
031.187-1.092-1.514-1.795
04-2.4191.119-2.121-0.317
05-2.121-1.139-1.8431.224
06-1.665-1.8431.262-2.121
07-2.7191.242-1.707-1.24
081.222-1.323-1.893-1.665
09-2.4191.266-1.707-1.707
10-2.059-1.115-1.8931.222
11-2.3361.286-2.188-1.75
12-2.5091.294-2.719-1.587
131.244-1.843-1.707-1.665
14-2.059-1.5871.281-2.719
15-2.1211.277-1.75-2.121
16-2.9851.298-2.608-1.55
17-1.893-1.665-2.4191.273
18-1.587-1.5871.244-2.121
19-1.514-1.7071.24-1.945
20-1.323-1.2671.201-2.059
21-1.550.853-1.0470.087
220.469-1.3530.731-2.719
231.201-1.069-1.55-2.121
Standard thresholds
P-value Threshold
0.001 -2.12489
0.0005 -0.67319
0.0001 2.44601