ZN560.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN560.H12INVIVO.0.P.C
Gene (human)	ZNF560 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	CCACTGCACTCCAGCCTGGGYRA
GC content	64.84%
Information content (bits; total / per base)	28.225 / 1.227
Data sources	ChIP-Seq
Aligned words	513

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (6)	0.828	0.832	0.698	0.715	0.908	0.937	15.018	15.709	114.77	177.398

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.177
HGNC	HGNC:26484
MGI
EntrezGene (human)	GeneID:147741 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN560_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96MR9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN560.H12INVIVO.0.P.C.pcm
PWM	ZN560.H12INVIVO.0.P.C.pwm
PFM	ZN560.H12INVIVO.0.P.C.pfm
Alignment	ZN560.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN560.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN560.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN560.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN560.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN560.H12INVIVO.0.P.C_homer_format_0.001.txt ZN560.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN560.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	17.0	451.0	24.0	21.0
02	11.0	472.0	13.0	17.0
03	424.0	42.0	27.0	20.0
04	10.0	396.0	14.0	93.0
05	14.0	40.0	19.0	440.0
06	23.0	19.0	457.0	14.0
07	7.0	448.0	22.0	36.0
08	439.0	33.0	18.0	23.0
09	10.0	459.0	22.0	22.0
10	15.0	41.0	18.0	439.0
11	11.0	468.0	13.0	21.0
12	9.0	472.0	7.0	25.0
13	449.0	19.0	22.0	23.0
14	15.0	25.0	466.0	7.0
15	14.0	464.0	21.0	14.0
16	5.0	474.0	8.0	26.0
17	18.0	23.0	10.0	462.0
18	25.0	25.0	449.0	14.0
19	27.0	22.0	447.0	17.0
20	33.0	35.0	430.0	15.0
21	26.0	303.0	44.0	140.0
22	206.0	32.0	268.0	7.0
23	430.0	43.0	26.0	14.0

PFM

	A	C	G	T
01	0.033	0.879	0.047	0.041
02	0.021	0.92	0.025	0.033
03	0.827	0.082	0.053	0.039
04	0.019	0.772	0.027	0.181
05	0.027	0.078	0.037	0.858
06	0.045	0.037	0.891	0.027
07	0.014	0.873	0.043	0.07
08	0.856	0.064	0.035	0.045
09	0.019	0.895	0.043	0.043
10	0.029	0.08	0.035	0.856
11	0.021	0.912	0.025	0.041
12	0.018	0.92	0.014	0.049
13	0.875	0.037	0.043	0.045
14	0.029	0.049	0.908	0.014
15	0.027	0.904	0.041	0.027
16	0.01	0.924	0.016	0.051
17	0.035	0.045	0.019	0.901
18	0.049	0.049	0.875	0.027
19	0.053	0.043	0.871	0.033
20	0.064	0.068	0.838	0.029
21	0.051	0.591	0.086	0.273
22	0.402	0.062	0.522	0.014
23	0.838	0.084	0.051	0.027

PWM

	A	C	G	T
01	-1.945	1.249	-1.625	-1.75
02	-2.336	1.294	-2.188	-1.945
03	1.187	-1.092	-1.514	-1.795
04	-2.419	1.119	-2.121	-0.317
05	-2.121	-1.139	-1.843	1.224
06	-1.665	-1.843	1.262	-2.121
07	-2.719	1.242	-1.707	-1.24
08	1.222	-1.323	-1.893	-1.665
09	-2.419	1.266	-1.707	-1.707
10	-2.059	-1.115	-1.893	1.222
11	-2.336	1.286	-2.188	-1.75
12	-2.509	1.294	-2.719	-1.587
13	1.244	-1.843	-1.707	-1.665
14	-2.059	-1.587	1.281	-2.719
15	-2.121	1.277	-1.75	-2.121
16	-2.985	1.298	-2.608	-1.55
17	-1.893	-1.665	-2.419	1.273
18	-1.587	-1.587	1.244	-2.121
19	-1.514	-1.707	1.24	-1.945
20	-1.323	-1.267	1.201	-2.059
21	-1.55	0.853	-1.047	0.087
22	0.469	-1.353	0.731	-2.719
23	1.201	-1.069	-1.55	-2.121

Standard thresholds

P-value	Threshold
0.001	-2.12489
0.0005	-0.67319
0.0001	2.44601