ZN558.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN558.H12INVITRO.0.P.D
Gene (human)	ZNF558 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	25
Consensus	WRRTKAAAGAYATvAAYMYACAvAT
GC content	32.12%
Information content (bits; total / per base)	25.251 / 1.01
Data sources	ChIP-Seq
Aligned words	779

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.839	0.959	0.849	0.959	0.873	0.973	10.126	13.34	348.377	601.538

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF558-like {2.3.3.43} (TFClass)
TFClass ID	TFClass: 2.3.3.43.1
HGNC	HGNC:26422
MGI
EntrezGene (human)	GeneID:148156 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN558_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96NG5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN558.H12INVITRO.0.P.D.pcm
PWM	ZN558.H12INVITRO.0.P.D.pwm
PFM	ZN558.H12INVITRO.0.P.D.pfm
Alignment	ZN558.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN558.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN558.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN558.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN558.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN558.H12INVITRO.0.P.D_homer_format_0.001.txt ZN558.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN558.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	96.0	44.0	62.0	577.0
02	256.0	20.0	484.0	19.0
03	580.0	56.0	105.0	38.0
04	63.0	34.0	16.0	666.0
05	57.0	16.0	616.0	90.0
06	670.0	38.0	44.0	27.0
07	630.0	102.0	18.0	29.0
08	707.0	0.0	65.0	7.0
09	21.0	15.0	690.0	53.0
10	634.0	13.0	110.0	22.0
11	97.0	517.0	25.0	140.0
12	708.0	16.0	15.0	40.0
13	12.0	147.0	8.0	612.0
14	269.0	124.0	302.0	84.0
15	641.0	72.0	41.0	25.0
16	692.0	28.0	34.0	25.0
17	91.0	150.0	48.0	490.0
18	190.0	513.0	9.0	67.0
19	43.0	300.0	27.0	409.0
20	672.0	26.0	38.0	43.0
21	43.0	647.0	7.0	82.0
22	761.0	0.0	9.0	9.0
23	214.0	124.0	321.0	120.0
24	667.0	12.0	79.0	21.0
25	11.0	50.0	19.0	699.0

PFM

	A	C	G	T
01	0.123	0.056	0.08	0.741
02	0.329	0.026	0.621	0.024
03	0.745	0.072	0.135	0.049
04	0.081	0.044	0.021	0.855
05	0.073	0.021	0.791	0.116
06	0.86	0.049	0.056	0.035
07	0.809	0.131	0.023	0.037
08	0.908	0.0	0.083	0.009
09	0.027	0.019	0.886	0.068
10	0.814	0.017	0.141	0.028
11	0.125	0.664	0.032	0.18
12	0.909	0.021	0.019	0.051
13	0.015	0.189	0.01	0.786
14	0.345	0.159	0.388	0.108
15	0.823	0.092	0.053	0.032
16	0.888	0.036	0.044	0.032
17	0.117	0.193	0.062	0.629
18	0.244	0.659	0.012	0.086
19	0.055	0.385	0.035	0.525
20	0.863	0.033	0.049	0.055
21	0.055	0.831	0.009	0.105
22	0.977	0.0	0.012	0.012
23	0.275	0.159	0.412	0.154
24	0.856	0.015	0.101	0.027
25	0.014	0.064	0.024	0.897

PWM

	A	C	G	T
01	-0.699	-1.459	-1.127	1.08
02	0.271	-2.205	0.905	-2.252
03	1.086	-1.226	-0.611	-1.6
04	-1.111	-1.706	-2.409	1.224
05	-1.208	-2.409	1.146	-0.762
06	1.23	-1.6	-1.459	-1.925
07	1.168	-0.639	-2.301	-1.857
08	1.283	-4.771	-1.081	-3.121
09	-2.159	-2.467	1.259	-1.279
10	1.174	-2.595	-0.565	-2.116
11	-0.689	0.971	-1.997	-0.327
12	1.285	-2.409	-2.467	-1.551
13	-2.665	-0.279	-3.012	1.139
14	0.321	-0.447	0.436	-0.83
15	1.185	-0.981	-1.527	-1.997
16	1.262	-1.89	-1.706	-1.997
17	-0.751	-0.259	-1.375	0.918
18	-0.024	0.963	-2.913	-1.051
19	-1.481	0.429	-1.925	0.738
20	1.233	-1.96	-1.6	-1.481
21	-1.481	1.195	-3.121	-0.853
22	1.357	-4.771	-2.913	-2.913
23	0.093	-0.447	0.496	-0.479
24	1.225	-2.665	-0.89	-2.159
25	-2.741	-1.335	-2.252	1.272

Standard thresholds

P-value	Threshold
0.001	-1.05839
0.0005	0.36216
0.0001	3.40426