MotifZN558.H12CORE.0.P.B
Gene (human)ZNF558
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length25
ConsensusWRRTKAAAGAYATvAAYMYACAvAT
GC content32.12%
Information content (bits; total / per base)25.251 / 1.01
Data sourcesChIP-Seq
Aligned words779

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (11) 0.839 0.959 0.849 0.959 0.873 0.973 10.126 13.34 348.377 601.538
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF558-like {2.3.3.43} (TFClass)
TFClass IDTFClass: 2.3.3.43.1
HGNCHGNC:26422
MGI
EntrezGene (human)GeneID:148156
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN558_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q96NG5
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0196.044.062.0577.0
02256.020.0484.019.0
03580.056.0105.038.0
0463.034.016.0666.0
0557.016.0616.090.0
06670.038.044.027.0
07630.0102.018.029.0
08707.00.065.07.0
0921.015.0690.053.0
10634.013.0110.022.0
1197.0517.025.0140.0
12708.016.015.040.0
1312.0147.08.0612.0
14269.0124.0302.084.0
15641.072.041.025.0
16692.028.034.025.0
1791.0150.048.0490.0
18190.0513.09.067.0
1943.0300.027.0409.0
20672.026.038.043.0
2143.0647.07.082.0
22761.00.09.09.0
23214.0124.0321.0120.0
24667.012.079.021.0
2511.050.019.0699.0
PFM
ACGT
010.1230.0560.080.741
020.3290.0260.6210.024
030.7450.0720.1350.049
040.0810.0440.0210.855
050.0730.0210.7910.116
060.860.0490.0560.035
070.8090.1310.0230.037
080.9080.00.0830.009
090.0270.0190.8860.068
100.8140.0170.1410.028
110.1250.6640.0320.18
120.9090.0210.0190.051
130.0150.1890.010.786
140.3450.1590.3880.108
150.8230.0920.0530.032
160.8880.0360.0440.032
170.1170.1930.0620.629
180.2440.6590.0120.086
190.0550.3850.0350.525
200.8630.0330.0490.055
210.0550.8310.0090.105
220.9770.00.0120.012
230.2750.1590.4120.154
240.8560.0150.1010.027
250.0140.0640.0240.897
PWM
ACGT
01-0.699-1.459-1.1271.08
020.271-2.2050.905-2.252
031.086-1.226-0.611-1.6
04-1.111-1.706-2.4091.224
05-1.208-2.4091.146-0.762
061.23-1.6-1.459-1.925
071.168-0.639-2.301-1.857
081.283-4.771-1.081-3.121
09-2.159-2.4671.259-1.279
101.174-2.595-0.565-2.116
11-0.6890.971-1.997-0.327
121.285-2.409-2.467-1.551
13-2.665-0.279-3.0121.139
140.321-0.4470.436-0.83
151.185-0.981-1.527-1.997
161.262-1.89-1.706-1.997
17-0.751-0.259-1.3750.918
18-0.0240.963-2.913-1.051
19-1.4810.429-1.9250.738
201.233-1.96-1.6-1.481
21-1.4811.195-3.121-0.853
221.357-4.771-2.913-2.913
230.093-0.4470.496-0.479
241.225-2.665-0.89-2.159
25-2.741-1.335-2.2521.272
Standard thresholds
P-value Threshold
0.001 -1.05839
0.0005 0.36216
0.0001 3.40426