ZN557.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN557.H12INVIVO.0.P.C
Gene (human)	ZNF557 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	25
Consensus	ddRbSYRvvdvdGvdYRbKdbbddG
GC content	52.32%
Information content (bits; total / per base)	10.979 / 0.439
Data sources	ChIP-Seq
Aligned words	675

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.7	0.739	0.488	0.535	0.83	0.853	4.321	5.93	93.689	96.42

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF558-like {2.3.3.43} (TFClass)
TFClass ID	TFClass: 2.3.3.43.2
HGNC	HGNC:28632
MGI
EntrezGene (human)	GeneID:79230 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN557_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N988 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN557.H12INVIVO.0.P.C.pcm
PWM	ZN557.H12INVIVO.0.P.C.pwm
PFM	ZN557.H12INVIVO.0.P.C.pfm
Alignment	ZN557.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN557.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN557.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN557.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN557.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN557.H12INVIVO.0.P.C_homer_format_0.001.txt ZN557.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN557.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	188.0	46.0	353.0	88.0
02	322.0	39.0	152.0	162.0
03	521.0	22.0	108.0	24.0
04	48.0	329.0	121.0	177.0
05	40.0	445.0	134.0	56.0
06	72.0	100.0	75.0	428.0
07	120.0	41.0	470.0	44.0
08	142.0	175.0	272.0	86.0
09	266.0	100.0	235.0	74.0
10	304.0	83.0	150.0	138.0
11	189.0	88.0	323.0	75.0
12	182.0	20.0	203.0	270.0
13	25.0	9.0	639.0	2.0
14	140.0	78.0	397.0	60.0
15	293.0	18.0	266.0	98.0
16	51.0	121.0	80.0	423.0
17	452.0	46.0	144.0	33.0
18	46.0	160.0	210.0	259.0
19	40.0	70.0	109.0	456.0
20	126.0	63.0	240.0	246.0
21	51.0	161.0	276.0	187.0
22	81.0	201.0	122.0	271.0
23	235.0	80.0	255.0	105.0
24	143.0	50.0	341.0	141.0
25	22.0	58.0	551.0	44.0

PFM

	A	C	G	T
01	0.279	0.068	0.523	0.13
02	0.477	0.058	0.225	0.24
03	0.772	0.033	0.16	0.036
04	0.071	0.487	0.179	0.262
05	0.059	0.659	0.199	0.083
06	0.107	0.148	0.111	0.634
07	0.178	0.061	0.696	0.065
08	0.21	0.259	0.403	0.127
09	0.394	0.148	0.348	0.11
10	0.45	0.123	0.222	0.204
11	0.28	0.13	0.479	0.111
12	0.27	0.03	0.301	0.4
13	0.037	0.013	0.947	0.003
14	0.207	0.116	0.588	0.089
15	0.434	0.027	0.394	0.145
16	0.076	0.179	0.119	0.627
17	0.67	0.068	0.213	0.049
18	0.068	0.237	0.311	0.384
19	0.059	0.104	0.161	0.676
20	0.187	0.093	0.356	0.364
21	0.076	0.239	0.409	0.277
22	0.12	0.298	0.181	0.401
23	0.348	0.119	0.378	0.156
24	0.212	0.074	0.505	0.209
25	0.033	0.086	0.816	0.065

PWM

	A	C	G	T
01	0.107	-1.275	0.733	-0.642
02	0.642	-1.434	-0.103	-0.04
03	1.121	-1.976	-0.441	-1.894
04	-1.233	0.663	-0.329	0.047
05	-1.409	0.964	-0.228	-1.084
06	-0.839	-0.517	-0.799	0.925
07	-0.337	-1.385	1.018	-1.317
08	-0.171	0.036	0.474	-0.665
09	0.452	-0.517	0.328	-0.812
10	0.584	-0.7	-0.117	-0.199
11	0.112	-0.642	0.645	-0.799
12	0.075	-2.064	0.183	0.466
13	-1.856	-2.774	1.324	-3.849
14	-0.185	-0.761	0.85	-1.017
15	0.548	-2.161	0.452	-0.537
16	-1.175	-0.329	-0.736	0.913
17	0.979	-1.275	-0.157	-1.593
18	-1.275	-0.053	0.217	0.425
19	-1.409	-0.867	-0.432	0.988
20	-0.289	-0.969	0.349	0.374
21	-1.175	-0.047	0.488	0.102
22	-0.724	0.173	-0.321	0.47
23	0.328	-0.736	0.41	-0.469
24	-0.164	-1.194	0.699	-0.178
25	-1.976	-1.05	1.177	-1.317

Standard thresholds

P-value	Threshold
0.001	4.51716
0.0005	5.33736
0.0001	7.06556