ZN554.H12INVIVO.1.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN554.H12INVIVO.1.P.C
Gene (human)	ZNF554 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	10
Consensus	dRMWGRGYCM
GC content	57.4%
Information content (bits; total / per base)	7.771 / 0.777
Data sources	ChIP-Seq
Aligned words	1015

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.774	0.79	0.675	0.696	0.753	0.772	2.392	2.502	160.108	192.523

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.63
HGNC	HGNC:26629
MGI
EntrezGene (human)	GeneID:115196 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN554_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q86TJ5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN554.H12INVIVO.1.P.C.pcm
PWM	ZN554.H12INVIVO.1.P.C.pwm
PFM	ZN554.H12INVIVO.1.P.C.pfm
Alignment	ZN554.H12INVIVO.1.P.C.words.tsv
Threshold to P-value map	ZN554.H12INVIVO.1.P.C.thr
Motif in other formats
JASPAR format	ZN554.H12INVIVO.1.P.C_jaspar_format.txt
MEME format	ZN554.H12INVIVO.1.P.C_meme_format.meme
Transfac format	ZN554.H12INVIVO.1.P.C_transfac_format.txt
Homer format	ZN554.H12INVIVO.1.P.C_homer_format_0.001.txt ZN554.H12INVIVO.1.P.C_homer_format_0.0005.txt ZN554.H12INVIVO.1.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	340.0	94.0	231.0	350.0
02	170.0	122.0	668.0	55.0
03	114.0	800.0	45.0	56.0
04	370.0	67.0	50.0	528.0
05	51.0	31.0	892.0	41.0
06	706.0	8.0	260.0	41.0
07	92.0	11.0	850.0	62.0
08	43.0	483.0	89.0	400.0
09	81.0	865.0	40.0	29.0
10	703.0	146.0	74.0	92.0

PFM

	A	C	G	T
01	0.335	0.093	0.228	0.345
02	0.167	0.12	0.658	0.054
03	0.112	0.788	0.044	0.055
04	0.365	0.066	0.049	0.52
05	0.05	0.031	0.879	0.04
06	0.696	0.008	0.256	0.04
07	0.091	0.011	0.837	0.061
08	0.042	0.476	0.088	0.394
09	0.08	0.852	0.039	0.029
10	0.693	0.144	0.073	0.091

PWM

	A	C	G	T
01	0.291	-0.982	-0.093	0.32
02	-0.397	-0.725	0.964	-1.505
03	-0.792	1.144	-1.699	-1.487
04	0.375	-1.313	-1.597	0.729
05	-1.578	-2.055	1.252	-1.788
06	1.019	-3.268	0.024	-1.788
07	-1.003	-2.999	1.204	-1.388
08	-1.742	0.64	-1.035	0.453
09	-1.128	1.222	-1.812	-2.118
10	1.015	-0.548	-1.216	-1.003

Standard thresholds

P-value	Threshold
0.001	4.94379
0.0005	5.627465
0.0001	7.036925