ZN554.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN554.H12INVIVO.0.P.C
Gene (human)	ZNF554 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	21
Consensus	dRYdGRGYCRnbbdRdddvMd
GC content	55.89%
Information content (bits; total / per base)	11.856 / 0.565
Data sources	ChIP-Seq
Aligned words	992

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.849	0.868	0.755	0.783	0.863	0.875	3.874	4.068	311.553	364.398

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.63
HGNC	HGNC:26629
MGI
EntrezGene (human)	GeneID:115196 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN554_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q86TJ5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN554.H12INVIVO.0.P.C.pcm
PWM	ZN554.H12INVIVO.0.P.C.pwm
PFM	ZN554.H12INVIVO.0.P.C.pfm
Alignment	ZN554.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN554.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN554.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN554.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN554.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN554.H12INVIVO.0.P.C_homer_format_0.001.txt ZN554.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN554.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	349.0	89.0	234.0	320.0
02	214.0	106.0	614.0	58.0
03	86.0	776.0	20.0	110.0
04	333.0	115.0	145.0	399.0
05	45.0	62.0	849.0	36.0
06	658.0	13.0	290.0	31.0
07	131.0	20.0	835.0	6.0
08	13.0	547.0	55.0	377.0
09	10.0	973.0	4.0	5.0
10	746.0	77.0	100.0	69.0
11	140.0	261.0	285.0	306.0
12	170.0	215.0	420.0	187.0
13	109.0	169.0	162.0	552.0
14	416.0	46.0	406.0	124.0
15	103.0	71.0	749.0	69.0
16	194.0	59.0	426.0	313.0
17	138.0	100.0	453.0	301.0
18	164.0	110.0	295.0	423.0
19	423.0	134.0	359.0	76.0
20	135.0	668.0	82.0	107.0
21	195.0	122.0	128.0	547.0

PFM

	A	C	G	T
01	0.352	0.09	0.236	0.323
02	0.216	0.107	0.619	0.058
03	0.087	0.782	0.02	0.111
04	0.336	0.116	0.146	0.402
05	0.045	0.063	0.856	0.036
06	0.663	0.013	0.292	0.031
07	0.132	0.02	0.842	0.006
08	0.013	0.551	0.055	0.38
09	0.01	0.981	0.004	0.005
10	0.752	0.078	0.101	0.07
11	0.141	0.263	0.287	0.308
12	0.171	0.217	0.423	0.189
13	0.11	0.17	0.163	0.556
14	0.419	0.046	0.409	0.125
15	0.104	0.072	0.755	0.07
16	0.196	0.059	0.429	0.316
17	0.139	0.101	0.457	0.303
18	0.165	0.111	0.297	0.426
19	0.426	0.135	0.362	0.077
20	0.136	0.673	0.083	0.108
21	0.197	0.123	0.129	0.551

PWM

	A	C	G	T
01	0.34	-1.013	-0.058	0.253
02	-0.146	-0.841	0.902	-1.431
03	-1.046	1.136	-2.442	-0.804
04	0.293	-0.761	-0.532	0.473
05	-1.676	-1.366	1.226	-1.89
06	0.971	-2.831	0.155	-2.032
07	-0.632	-2.442	1.209	-3.476
08	-2.831	0.787	-1.482	0.416
09	-3.059	1.362	-3.776	-3.615
10	1.097	-1.154	-0.898	-1.262
11	-0.566	0.051	0.138	0.209
12	-0.374	-0.142	0.524	-0.28
13	-0.813	-0.38	-0.422	0.796
14	0.514	-1.655	0.49	-0.686
15	-0.869	-1.234	1.101	-1.262
16	-0.244	-1.414	0.538	0.231
17	-0.581	-0.898	0.599	0.192
18	-0.41	-0.804	0.172	0.531
19	0.531	-0.61	0.368	-1.167
20	-0.602	0.987	-1.093	-0.832
21	-0.239	-0.702	-0.655	0.787

Standard thresholds

P-value	Threshold
0.001	4.31196
0.0005	5.20776
0.0001	7.07541