MotifZN554.H12INVIVO.0.P.C
Gene (human)ZNF554
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length21
ConsensusdRYdGRGYCRnbbdRdddvMd
GC content55.89%
Information content (bits; total / per base)11.856 / 0.565
Data sourcesChIP-Seq
Aligned words992

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.849 0.868 0.755 0.783 0.863 0.875 3.874 4.068 311.553 364.398
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.63
HGNCHGNC:26629
MGI
EntrezGene (human)GeneID:115196
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN554_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q86TJ5
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01349.089.0234.0320.0
02214.0106.0614.058.0
0386.0776.020.0110.0
04333.0115.0145.0399.0
0545.062.0849.036.0
06658.013.0290.031.0
07131.020.0835.06.0
0813.0547.055.0377.0
0910.0973.04.05.0
10746.077.0100.069.0
11140.0261.0285.0306.0
12170.0215.0420.0187.0
13109.0169.0162.0552.0
14416.046.0406.0124.0
15103.071.0749.069.0
16194.059.0426.0313.0
17138.0100.0453.0301.0
18164.0110.0295.0423.0
19423.0134.0359.076.0
20135.0668.082.0107.0
21195.0122.0128.0547.0
PFM
ACGT
010.3520.090.2360.323
020.2160.1070.6190.058
030.0870.7820.020.111
040.3360.1160.1460.402
050.0450.0630.8560.036
060.6630.0130.2920.031
070.1320.020.8420.006
080.0130.5510.0550.38
090.010.9810.0040.005
100.7520.0780.1010.07
110.1410.2630.2870.308
120.1710.2170.4230.189
130.110.170.1630.556
140.4190.0460.4090.125
150.1040.0720.7550.07
160.1960.0590.4290.316
170.1390.1010.4570.303
180.1650.1110.2970.426
190.4260.1350.3620.077
200.1360.6730.0830.108
210.1970.1230.1290.551
PWM
ACGT
010.34-1.013-0.0580.253
02-0.146-0.8410.902-1.431
03-1.0461.136-2.442-0.804
040.293-0.761-0.5320.473
05-1.676-1.3661.226-1.89
060.971-2.8310.155-2.032
07-0.632-2.4421.209-3.476
08-2.8310.787-1.4820.416
09-3.0591.362-3.776-3.615
101.097-1.154-0.898-1.262
11-0.5660.0510.1380.209
12-0.374-0.1420.524-0.28
13-0.813-0.38-0.4220.796
140.514-1.6550.49-0.686
15-0.869-1.2341.101-1.262
16-0.244-1.4140.5380.231
17-0.581-0.8980.5990.192
18-0.41-0.8040.1720.531
190.531-0.610.368-1.167
20-0.6020.987-1.093-0.832
21-0.239-0.702-0.6550.787
Standard thresholds
P-value Threshold
0.001 4.31196
0.0005 5.20776
0.0001 7.07541