| Motif | ZN554.H12INVITRO.1.P.D |
| Gene (human) | ZNF554 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | ZN554.H12INVITRO.1.P.D |
| Gene (human) | ZNF554 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 10 |
| Consensus | dRMWGRGYCM |
| GC content | 57.4% |
| Information content (bits; total / per base) | 7.771 / 0.777 |
| Data sources | ChIP-Seq |
| Aligned words | 1015 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (5) | 0.774 | 0.79 | 0.675 | 0.696 | 0.753 | 0.772 | 2.392 | 2.502 | 160.108 | 192.523 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | Unclassified {2.3.3.0} (TFClass) |
| TFClass ID | TFClass: 2.3.3.0.63 |
| HGNC | HGNC:26629 |
| MGI | |
| EntrezGene (human) | GeneID:115196 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | ZN554_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q86TJ5 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | ZN554.H12INVITRO.1.P.D.pcm |
| PWM | ZN554.H12INVITRO.1.P.D.pwm |
| PFM | ZN554.H12INVITRO.1.P.D.pfm |
| Alignment | ZN554.H12INVITRO.1.P.D.words.tsv |
| Threshold to P-value map | ZN554.H12INVITRO.1.P.D.thr |
| Motif in other formats | |
| JASPAR format | ZN554.H12INVITRO.1.P.D_jaspar_format.txt |
| MEME format | ZN554.H12INVITRO.1.P.D_meme_format.meme |
| Transfac format | ZN554.H12INVITRO.1.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 340.0 | 94.0 | 231.0 | 350.0 |
| 02 | 170.0 | 122.0 | 668.0 | 55.0 |
| 03 | 114.0 | 800.0 | 45.0 | 56.0 |
| 04 | 370.0 | 67.0 | 50.0 | 528.0 |
| 05 | 51.0 | 31.0 | 892.0 | 41.0 |
| 06 | 706.0 | 8.0 | 260.0 | 41.0 |
| 07 | 92.0 | 11.0 | 850.0 | 62.0 |
| 08 | 43.0 | 483.0 | 89.0 | 400.0 |
| 09 | 81.0 | 865.0 | 40.0 | 29.0 |
| 10 | 703.0 | 146.0 | 74.0 | 92.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.335 | 0.093 | 0.228 | 0.345 |
| 02 | 0.167 | 0.12 | 0.658 | 0.054 |
| 03 | 0.112 | 0.788 | 0.044 | 0.055 |
| 04 | 0.365 | 0.066 | 0.049 | 0.52 |
| 05 | 0.05 | 0.031 | 0.879 | 0.04 |
| 06 | 0.696 | 0.008 | 0.256 | 0.04 |
| 07 | 0.091 | 0.011 | 0.837 | 0.061 |
| 08 | 0.042 | 0.476 | 0.088 | 0.394 |
| 09 | 0.08 | 0.852 | 0.039 | 0.029 |
| 10 | 0.693 | 0.144 | 0.073 | 0.091 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.291 | -0.982 | -0.093 | 0.32 |
| 02 | -0.397 | -0.725 | 0.964 | -1.505 |
| 03 | -0.792 | 1.144 | -1.699 | -1.487 |
| 04 | 0.375 | -1.313 | -1.597 | 0.729 |
| 05 | -1.578 | -2.055 | 1.252 | -1.788 |
| 06 | 1.019 | -3.268 | 0.024 | -1.788 |
| 07 | -1.003 | -2.999 | 1.204 | -1.388 |
| 08 | -1.742 | 0.64 | -1.035 | 0.453 |
| 09 | -1.128 | 1.222 | -1.812 | -2.118 |
| 10 | 1.015 | -0.548 | -1.216 | -1.003 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.94379 |
| 0.0005 | 5.627465 |
| 0.0001 | 7.036925 |