MotifZN554.H12INVITRO.1.P.D
Gene (human)ZNF554
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length10
ConsensusdRMWGRGYCM
GC content57.4%
Information content (bits; total / per base)7.771 / 0.777
Data sourcesChIP-Seq
Aligned words1015

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.774 0.79 0.675 0.696 0.753 0.772 2.392 2.502 160.108 192.523
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.63
HGNCHGNC:26629
MGI
EntrezGene (human)GeneID:115196
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN554_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q86TJ5
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01340.094.0231.0350.0
02170.0122.0668.055.0
03114.0800.045.056.0
04370.067.050.0528.0
0551.031.0892.041.0
06706.08.0260.041.0
0792.011.0850.062.0
0843.0483.089.0400.0
0981.0865.040.029.0
10703.0146.074.092.0
PFM
ACGT
010.3350.0930.2280.345
020.1670.120.6580.054
030.1120.7880.0440.055
040.3650.0660.0490.52
050.050.0310.8790.04
060.6960.0080.2560.04
070.0910.0110.8370.061
080.0420.4760.0880.394
090.080.8520.0390.029
100.6930.1440.0730.091
PWM
ACGT
010.291-0.982-0.0930.32
02-0.397-0.7250.964-1.505
03-0.7921.144-1.699-1.487
040.375-1.313-1.5970.729
05-1.578-2.0551.252-1.788
061.019-3.2680.024-1.788
07-1.003-2.9991.204-1.388
08-1.7420.64-1.0350.453
09-1.1281.222-1.812-2.118
101.015-0.548-1.216-1.003
Standard thresholds
P-value Threshold
0.001 4.94379
0.0005 5.627465
0.0001 7.036925