MotifZN550.H12INVIVO.0.P.C
Gene (human)ZNF550
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length31
ConsensusCTTCTGCACTGCCCTAGCAGAGGTTCTCCAT
GC content53.52%
Information content (bits; total / per base)50.73 / 1.636
Data sourcesChIP-Seq
Aligned words61

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (2) 0.761 0.761 0.756 0.756 0.904 0.904 12.58 12.58 59.745 59.745
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.71
HGNCHGNC:28643
MGI
EntrezGene (human)GeneID:162972
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN550_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q7Z398
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
010.054.00.07.0
020.05.01.055.0
034.00.01.056.0
040.055.00.06.0
054.08.01.048.0
061.00.060.00.0
070.061.00.00.0
0855.00.00.06.0
090.061.00.00.0
100.00.00.061.0
1111.00.050.00.0
120.060.00.01.0
130.061.00.00.0
140.056.00.05.0
150.00.00.061.0
1661.00.00.00.0
170.00.061.00.0
180.060.00.01.0
1958.03.00.00.0
203.00.053.05.0
2156.01.00.04.0
224.03.054.00.0
237.01.053.00.0
240.05.01.055.0
250.00.00.061.0
261.053.00.07.0
270.03.00.058.0
280.059.01.01.0
290.054.00.07.0
3053.03.04.01.0
312.05.01.053.0
PFM
ACGT
010.00.8850.00.115
020.00.0820.0160.902
030.0660.00.0160.918
040.00.9020.00.098
050.0660.1310.0160.787
060.0160.00.9840.0
070.01.00.00.0
080.9020.00.00.098
090.01.00.00.0
100.00.00.01.0
110.180.00.820.0
120.00.9840.00.016
130.01.00.00.0
140.00.9180.00.082
150.00.00.01.0
161.00.00.00.0
170.00.01.00.0
180.00.9840.00.016
190.9510.0490.00.0
200.0490.00.8690.082
210.9180.0160.00.066
220.0660.0490.8850.0
230.1150.0160.8690.0
240.00.0820.0160.902
250.00.00.01.0
260.0160.8690.00.115
270.00.0490.00.951
280.00.9670.0160.016
290.00.8850.00.115
300.8690.0490.0660.016
310.0330.0820.0160.869
PWM
ACGT
01-2.7621.218-2.762-0.707
02-2.762-0.993-2.0831.236
03-1.175-2.762-2.0831.254
04-2.7621.236-2.762-0.84
05-1.175-0.589-2.0831.103
06-2.083-2.7621.322-2.762
07-2.7621.338-2.762-2.762
081.236-2.762-2.762-0.84
09-2.7621.338-2.762-2.762
10-2.762-2.762-2.7621.338
11-0.303-2.7621.143-2.762
12-2.7621.322-2.762-2.083
13-2.7621.338-2.762-2.762
14-2.7621.254-2.762-0.993
15-2.762-2.762-2.7621.338
161.338-2.762-2.762-2.762
17-2.762-2.7621.338-2.762
18-2.7621.322-2.762-2.083
191.288-1.397-2.762-2.762
20-1.397-2.7621.2-0.993
211.254-2.083-2.762-1.175
22-1.175-1.3971.218-2.762
23-0.707-2.0831.2-2.762
24-2.762-0.993-2.0831.236
25-2.762-2.762-2.7621.338
26-2.0831.2-2.762-0.707
27-2.762-1.397-2.7621.288
28-2.7621.305-2.083-2.083
29-2.7621.218-2.762-0.707
301.2-1.397-1.175-2.083
31-1.682-0.993-2.0831.2
Standard thresholds
P-value Threshold
0.001 -12.45169
0.0005 -10.50464
0.0001 -6.29414