MotifZN549.H12INVITRO.0.P.D
Gene (human)ZNF549
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length22
ConsensusWKYYAKSRRYhGGGCAGChbhv
GC content53.79%
Information content (bits; total / per base)18.651 / 0.848
Data sourcesChIP-Seq
Aligned words882

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 4 (19) 0.921 0.966 0.917 0.957 0.907 0.963 9.341 11.047 410.959 565.638
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.180
HGNCHGNC:26632
MGI
EntrezGene (human)GeneID:256051
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN549_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q6P9A3
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 4 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01493.068.072.0249.0
0253.098.0209.0522.0
0343.0109.082.0648.0
0428.0637.016.0201.0
05830.013.026.013.0
0647.027.0262.0546.0
0760.0105.0620.097.0
08570.0112.0130.070.0
09640.015.0167.060.0
1034.0346.024.0478.0
11141.0278.033.0430.0
12143.05.0717.017.0
138.014.0849.011.0
1457.067.0755.03.0
1524.0830.022.06.0
16739.057.056.030.0
1715.025.0825.017.0
1820.0789.043.030.0
19492.0190.095.0105.0
2070.0427.0142.0243.0
21120.0424.092.0246.0
22169.0401.0163.0149.0
PFM
ACGT
010.5590.0770.0820.282
020.060.1110.2370.592
030.0490.1240.0930.735
040.0320.7220.0180.228
050.9410.0150.0290.015
060.0530.0310.2970.619
070.0680.1190.7030.11
080.6460.1270.1470.079
090.7260.0170.1890.068
100.0390.3920.0270.542
110.160.3150.0370.488
120.1620.0060.8130.019
130.0090.0160.9630.012
140.0650.0760.8560.003
150.0270.9410.0250.007
160.8380.0650.0630.034
170.0170.0280.9350.019
180.0230.8950.0490.034
190.5580.2150.1080.119
200.0790.4840.1610.276
210.1360.4810.1040.279
220.1920.4550.1850.169
PWM
ACGT
010.8-1.159-1.1040.121
02-1.402-0.801-0.0530.857
03-1.604-0.697-0.9761.073
04-2.0131.056-2.53-0.092
051.32-2.716-2.082-2.716
06-1.518-2.0470.1710.902
07-1.281-0.7341.029-0.812
080.945-0.67-0.523-1.131
091.061-2.588-0.275-1.281
10-1.8290.448-2.1570.77
11-0.4430.23-1.8570.664
12-0.429-3.5021.174-2.475
13-3.132-2.651.342-2.862
14-1.331-1.1741.225-3.857
15-2.1571.32-2.238-3.363
161.204-1.331-1.348-1.947
17-2.588-2.1191.314-2.475
18-2.3261.269-1.604-1.947
190.798-0.148-0.832-0.734
20-1.1310.657-0.4360.096
21-0.6020.65-0.8640.109
22-0.2640.595-0.299-0.388
Standard thresholds
P-value Threshold
0.001 1.88086
0.0005 3.08941
0.0001 5.66121