ZN549.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN549.H12INVITRO.0.P.D
Gene (human)	ZNF549 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	22
Consensus	WKYYAKSRRYhGGGCAGChbhv
GC content	53.79%
Information content (bits; total / per base)	18.651 / 0.848
Data sources	ChIP-Seq
Aligned words	882

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (19)	0.921	0.966	0.917	0.957	0.907	0.963	9.341	11.047	410.959	565.638

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.180
HGNC	HGNC:26632
MGI
EntrezGene (human)	GeneID:256051 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN549_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6P9A3 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN549.H12INVITRO.0.P.D.pcm
PWM	ZN549.H12INVITRO.0.P.D.pwm
PFM	ZN549.H12INVITRO.0.P.D.pfm
Alignment	ZN549.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN549.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN549.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN549.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN549.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN549.H12INVITRO.0.P.D_homer_format_0.001.txt ZN549.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN549.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	493.0	68.0	72.0	249.0
02	53.0	98.0	209.0	522.0
03	43.0	109.0	82.0	648.0
04	28.0	637.0	16.0	201.0
05	830.0	13.0	26.0	13.0
06	47.0	27.0	262.0	546.0
07	60.0	105.0	620.0	97.0
08	570.0	112.0	130.0	70.0
09	640.0	15.0	167.0	60.0
10	34.0	346.0	24.0	478.0
11	141.0	278.0	33.0	430.0
12	143.0	5.0	717.0	17.0
13	8.0	14.0	849.0	11.0
14	57.0	67.0	755.0	3.0
15	24.0	830.0	22.0	6.0
16	739.0	57.0	56.0	30.0
17	15.0	25.0	825.0	17.0
18	20.0	789.0	43.0	30.0
19	492.0	190.0	95.0	105.0
20	70.0	427.0	142.0	243.0
21	120.0	424.0	92.0	246.0
22	169.0	401.0	163.0	149.0

PFM

	A	C	G	T
01	0.559	0.077	0.082	0.282
02	0.06	0.111	0.237	0.592
03	0.049	0.124	0.093	0.735
04	0.032	0.722	0.018	0.228
05	0.941	0.015	0.029	0.015
06	0.053	0.031	0.297	0.619
07	0.068	0.119	0.703	0.11
08	0.646	0.127	0.147	0.079
09	0.726	0.017	0.189	0.068
10	0.039	0.392	0.027	0.542
11	0.16	0.315	0.037	0.488
12	0.162	0.006	0.813	0.019
13	0.009	0.016	0.963	0.012
14	0.065	0.076	0.856	0.003
15	0.027	0.941	0.025	0.007
16	0.838	0.065	0.063	0.034
17	0.017	0.028	0.935	0.019
18	0.023	0.895	0.049	0.034
19	0.558	0.215	0.108	0.119
20	0.079	0.484	0.161	0.276
21	0.136	0.481	0.104	0.279
22	0.192	0.455	0.185	0.169

PWM

	A	C	G	T
01	0.8	-1.159	-1.104	0.121
02	-1.402	-0.801	-0.053	0.857
03	-1.604	-0.697	-0.976	1.073
04	-2.013	1.056	-2.53	-0.092
05	1.32	-2.716	-2.082	-2.716
06	-1.518	-2.047	0.171	0.902
07	-1.281	-0.734	1.029	-0.812
08	0.945	-0.67	-0.523	-1.131
09	1.061	-2.588	-0.275	-1.281
10	-1.829	0.448	-2.157	0.77
11	-0.443	0.23	-1.857	0.664
12	-0.429	-3.502	1.174	-2.475
13	-3.132	-2.65	1.342	-2.862
14	-1.331	-1.174	1.225	-3.857
15	-2.157	1.32	-2.238	-3.363
16	1.204	-1.331	-1.348	-1.947
17	-2.588	-2.119	1.314	-2.475
18	-2.326	1.269	-1.604	-1.947
19	0.798	-0.148	-0.832	-0.734
20	-1.131	0.657	-0.436	0.096
21	-0.602	0.65	-0.864	0.109
22	-0.264	0.595	-0.299	-0.388

Standard thresholds

P-value	Threshold
0.001	1.88086
0.0005	3.08941
0.0001	5.66121