ZN548.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN548.H12INVITRO.0.P.D
Gene (human)	ZNF548 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	SvRRvbvRvRGhKbYdGSAGGRh
GC content	63.3%
Information content (bits; total / per base)	15.897 / 0.691
Data sources	ChIP-Seq
Aligned words	333

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (10)	0.905	0.942	0.871	0.929	0.917	0.952	8.736	10.782	161.268	404.31

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF548-like {2.3.3.53} (TFClass)
TFClass ID	TFClass: 2.3.3.53.1
HGNC	HGNC:26561
MGI
EntrezGene (human)	GeneID:147694 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN548_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8NEK5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN548.H12INVITRO.0.P.D.pcm
PWM	ZN548.H12INVITRO.0.P.D.pwm
PFM	ZN548.H12INVITRO.0.P.D.pfm
Alignment	ZN548.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN548.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN548.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN548.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN548.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN548.H12INVITRO.0.P.D_homer_format_0.001.txt ZN548.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN548.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	43.0	221.0	55.0	14.0
02	188.0	52.0	72.0	21.0
03	215.0	32.0	74.0	12.0
04	55.0	42.0	218.0	18.0
05	148.0	45.0	115.0	25.0
06	52.0	64.0	63.0	154.0
07	45.0	158.0	96.0	34.0
08	179.0	56.0	92.0	6.0
09	180.0	68.0	56.0	29.0
10	55.0	15.0	247.0	16.0
11	20.0	13.0	299.0	1.0
12	43.0	67.0	34.0	189.0
13	33.0	11.0	250.0	39.0
14	15.0	78.0	150.0	90.0
15	9.0	252.0	21.0	51.0
16	106.0	26.0	90.0	111.0
17	4.0	6.0	315.0	8.0
18	11.0	244.0	59.0	19.0
19	285.0	10.0	19.0	19.0
20	17.0	2.0	308.0	6.0
21	24.0	11.0	289.0	9.0
22	29.0	20.0	264.0	20.0
23	45.0	126.0	43.0	119.0

PFM

	A	C	G	T
01	0.129	0.664	0.165	0.042
02	0.565	0.156	0.216	0.063
03	0.646	0.096	0.222	0.036
04	0.165	0.126	0.655	0.054
05	0.444	0.135	0.345	0.075
06	0.156	0.192	0.189	0.462
07	0.135	0.474	0.288	0.102
08	0.538	0.168	0.276	0.018
09	0.541	0.204	0.168	0.087
10	0.165	0.045	0.742	0.048
11	0.06	0.039	0.898	0.003
12	0.129	0.201	0.102	0.568
13	0.099	0.033	0.751	0.117
14	0.045	0.234	0.45	0.27
15	0.027	0.757	0.063	0.153
16	0.318	0.078	0.27	0.333
17	0.012	0.018	0.946	0.024
18	0.033	0.733	0.177	0.057
19	0.856	0.03	0.057	0.057
20	0.051	0.006	0.925	0.018
21	0.072	0.033	0.868	0.027
22	0.087	0.06	0.793	0.06
23	0.135	0.378	0.129	0.357

PWM

	A	C	G	T
01	-0.645	0.966	-0.406	-1.701
02	0.805	-0.46	-0.143	-1.328
03	0.938	-0.929	-0.116	-1.84
04	-0.406	-0.667	0.952	-1.471
05	0.568	-0.601	0.318	-1.164
06	-0.46	-0.258	-0.273	0.607
07	-0.601	0.633	0.14	-0.871
08	0.756	-0.388	0.098	-2.431
09	0.762	-0.199	-0.388	-1.023
10	-0.406	-1.639	1.076	-1.58
11	-1.373	-1.768	1.266	-3.542
12	-0.645	-0.213	-0.871	0.81
13	-0.9	-1.917	1.088	-0.739
14	-1.639	-0.064	0.581	0.077
15	-2.092	1.096	-1.328	-0.479
16	0.238	-1.127	0.077	0.283
17	-2.743	-2.431	1.318	-2.193
18	-1.917	1.064	-0.337	-1.421
19	1.218	-2.001	-1.421	-1.421
20	-1.524	-3.2	1.296	-2.431
21	-1.202	-1.917	1.232	-2.092
22	-1.023	-1.373	1.142	-1.373
23	-0.601	0.409	-0.645	0.352

Standard thresholds

P-value	Threshold
0.001	3.26326
0.0005	4.29821
0.0001	6.49991