MotifZN548.H12CORE.0.P.B
Gene (human)ZNF548
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length23
ConsensusSvRRvbvRvRGhKbYdGSAGGRh
GC content63.3%
Information content (bits; total / per base)15.897 / 0.691
Data sourcesChIP-Seq
Aligned words333

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (10) 0.905 0.942 0.871 0.929 0.917 0.952 8.736 10.782 161.268 404.31
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF548-like {2.3.3.53} (TFClass)
TFClass IDTFClass: 2.3.3.53.1
HGNCHGNC:26561
MGI
EntrezGene (human)GeneID:147694
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN548_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q8NEK5
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0143.0221.055.014.0
02188.052.072.021.0
03215.032.074.012.0
0455.042.0218.018.0
05148.045.0115.025.0
0652.064.063.0154.0
0745.0158.096.034.0
08179.056.092.06.0
09180.068.056.029.0
1055.015.0247.016.0
1120.013.0299.01.0
1243.067.034.0189.0
1333.011.0250.039.0
1415.078.0150.090.0
159.0252.021.051.0
16106.026.090.0111.0
174.06.0315.08.0
1811.0244.059.019.0
19285.010.019.019.0
2017.02.0308.06.0
2124.011.0289.09.0
2229.020.0264.020.0
2345.0126.043.0119.0
PFM
ACGT
010.1290.6640.1650.042
020.5650.1560.2160.063
030.6460.0960.2220.036
040.1650.1260.6550.054
050.4440.1350.3450.075
060.1560.1920.1890.462
070.1350.4740.2880.102
080.5380.1680.2760.018
090.5410.2040.1680.087
100.1650.0450.7420.048
110.060.0390.8980.003
120.1290.2010.1020.568
130.0990.0330.7510.117
140.0450.2340.450.27
150.0270.7570.0630.153
160.3180.0780.270.333
170.0120.0180.9460.024
180.0330.7330.1770.057
190.8560.030.0570.057
200.0510.0060.9250.018
210.0720.0330.8680.027
220.0870.060.7930.06
230.1350.3780.1290.357
PWM
ACGT
01-0.6450.966-0.406-1.701
020.805-0.46-0.143-1.328
030.938-0.929-0.116-1.84
04-0.406-0.6670.952-1.471
050.568-0.6010.318-1.164
06-0.46-0.258-0.2730.607
07-0.6010.6330.14-0.871
080.756-0.3880.098-2.431
090.762-0.199-0.388-1.023
10-0.406-1.6391.076-1.58
11-1.373-1.7681.266-3.542
12-0.645-0.213-0.8710.81
13-0.9-1.9171.088-0.739
14-1.639-0.0640.5810.077
15-2.0921.096-1.328-0.479
160.238-1.1270.0770.283
17-2.743-2.4311.318-2.193
18-1.9171.064-0.337-1.421
191.218-2.001-1.421-1.421
20-1.524-3.21.296-2.431
21-1.202-1.9171.232-2.092
22-1.023-1.3731.142-1.373
23-0.6010.409-0.6450.352
Standard thresholds
P-value Threshold
0.001 3.26326
0.0005 4.29821
0.0001 6.49991