ZN547.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN547.H12INVITRO.0.P.D
Gene (human)	ZNF547 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	22
Consensus	nWSCWMAYKChRCMRRCRndCh
GC content	51.09%
Information content (bits; total / per base)	16.464 / 0.748
Data sources	ChIP-Seq
Aligned words	731

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (15)	0.815	0.895	0.791	0.85	0.785	0.853	5.354	5.848	260.699	355.886

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.97
HGNC	HGNC:26432
MGI
EntrezGene (human)	GeneID:284306 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN547_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8IVP9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN547.H12INVITRO.0.P.D.pcm
PWM	ZN547.H12INVITRO.0.P.D.pwm
PFM	ZN547.H12INVITRO.0.P.D.pfm
Alignment	ZN547.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN547.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN547.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN547.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN547.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN547.H12INVITRO.0.P.D_homer_format_0.001.txt ZN547.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN547.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	105.0	155.0	251.0	220.0
02	99.0	86.0	73.0	473.0
03	50.0	72.0	576.0	33.0
04	24.0	596.0	2.0	109.0
05	200.0	64.0	58.0	409.0
06	533.0	89.0	75.0	34.0
07	695.0	6.0	28.0	2.0
08	105.0	144.0	27.0	455.0
09	3.0	38.0	402.0	288.0
10	2.0	728.0	1.0	0.0
11	283.0	118.0	53.0	277.0
12	178.0	23.0	492.0	38.0
13	10.0	650.0	14.0	57.0
14	572.0	82.0	20.0	57.0
15	237.0	63.0	386.0	45.0
16	159.0	46.0	475.0	51.0
17	75.0	596.0	19.0	41.0
18	481.0	58.0	135.0	57.0
19	132.0	168.0	157.0	274.0
20	341.0	48.0	272.0	70.0
21	30.0	591.0	63.0	47.0
22	386.0	164.0	52.0	129.0

PFM

	A	C	G	T
01	0.144	0.212	0.343	0.301
02	0.135	0.118	0.1	0.647
03	0.068	0.098	0.788	0.045
04	0.033	0.815	0.003	0.149
05	0.274	0.088	0.079	0.56
06	0.729	0.122	0.103	0.047
07	0.951	0.008	0.038	0.003
08	0.144	0.197	0.037	0.622
09	0.004	0.052	0.55	0.394
10	0.003	0.996	0.001	0.0
11	0.387	0.161	0.073	0.379
12	0.244	0.031	0.673	0.052
13	0.014	0.889	0.019	0.078
14	0.782	0.112	0.027	0.078
15	0.324	0.086	0.528	0.062
16	0.218	0.063	0.65	0.07
17	0.103	0.815	0.026	0.056
18	0.658	0.079	0.185	0.078
19	0.181	0.23	0.215	0.375
20	0.466	0.066	0.372	0.096
21	0.041	0.808	0.086	0.064
22	0.528	0.224	0.071	0.176

PWM

	A	C	G	T
01	-0.548	-0.163	0.315	0.184
02	-0.605	-0.744	-0.904	0.945
03	-1.273	-0.918	1.142	-1.672
04	-1.973	1.176	-3.923	-0.511
05	0.089	-1.033	-1.129	0.801
06	1.065	-0.71	-0.878	-1.643
07	1.329	-3.183	-1.828	-3.923
08	-0.548	-0.236	-1.862	0.907
09	-3.681	-1.537	0.783	0.452
10	-3.923	1.375	-4.243	-4.717
11	0.434	-0.433	-1.216	0.413
12	-0.026	-2.012	0.985	-1.537
13	-2.762	1.262	-2.467	-1.146
14	1.135	-0.79	-2.142	-1.146
15	0.258	-1.048	0.743	-1.374
16	-0.138	-1.353	0.95	-1.253
17	-0.878	1.176	-2.189	-1.464
18	0.962	-1.129	-0.3	-1.146
19	-0.322	-0.083	-0.15	0.402
20	0.62	-1.312	0.395	-0.945
21	-1.762	1.168	-1.048	-1.332
22	0.743	-0.107	-1.235	-0.345

Standard thresholds

P-value	Threshold
0.001	2.81451
0.0005	3.94301
0.0001	6.31491