ZN543.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN543.H12INVITRO.0.P.D
Gene (human)	ZNF543 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	YSbbKSCnhvbSGSCYCCKCM
GC content	74.26%
Information content (bits; total / per base)	14.121 / 0.672
Data sources	ChIP-Seq
Aligned words	975

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.803	0.812	0.662	0.665	0.79	0.798	2.894	2.904	129.403	153.268

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF460-like {2.3.3.54} (TFClass)
TFClass ID	TFClass: 2.3.3.54.4
HGNC	HGNC:25281
MGI
EntrezGene (human)	GeneID:125919 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN543_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q08ER8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN543.H12INVITRO.0.P.D.pcm
PWM	ZN543.H12INVITRO.0.P.D.pwm
PFM	ZN543.H12INVITRO.0.P.D.pfm
Alignment	ZN543.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN543.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN543.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN543.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN543.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN543.H12INVITRO.0.P.D_homer_format_0.001.txt ZN543.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN543.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	47.0	648.0	116.0	164.0
02	62.0	628.0	143.0	142.0
03	49.0	508.0	138.0	280.0
04	99.0	272.0	312.0	292.0
05	42.0	135.0	625.0	173.0
06	120.0	698.0	121.0	36.0
07	35.0	847.0	13.0	80.0
08	215.0	237.0	176.0	347.0
09	181.0	554.0	87.0	153.0
10	170.0	452.0	258.0	95.0
11	119.0	311.0	214.0	331.0
12	72.0	188.0	643.0	72.0
13	23.0	13.0	814.0	125.0
14	35.0	628.0	169.0	143.0
15	27.0	834.0	23.0	91.0
16	8.0	684.0	53.0	230.0
17	9.0	814.0	58.0	94.0
18	61.0	780.0	28.0	106.0
19	34.0	165.0	177.0	599.0
20	16.0	867.0	34.0	58.0
21	141.0	712.0	27.0	95.0

PFM

	A	C	G	T
01	0.048	0.665	0.119	0.168
02	0.064	0.644	0.147	0.146
03	0.05	0.521	0.142	0.287
04	0.102	0.279	0.32	0.299
05	0.043	0.138	0.641	0.177
06	0.123	0.716	0.124	0.037
07	0.036	0.869	0.013	0.082
08	0.221	0.243	0.181	0.356
09	0.186	0.568	0.089	0.157
10	0.174	0.464	0.265	0.097
11	0.122	0.319	0.219	0.339
12	0.074	0.193	0.659	0.074
13	0.024	0.013	0.835	0.128
14	0.036	0.644	0.173	0.147
15	0.028	0.855	0.024	0.093
16	0.008	0.702	0.054	0.236
17	0.009	0.835	0.059	0.096
18	0.063	0.8	0.029	0.109
19	0.035	0.169	0.182	0.614
20	0.016	0.889	0.035	0.059
21	0.145	0.73	0.028	0.097

PWM

	A	C	G	T
01	-1.617	0.973	-0.735	-0.393
02	-1.349	0.942	-0.528	-0.535
03	-1.577	0.731	-0.564	0.138
04	-0.891	0.109	0.245	0.179
05	-1.725	-0.585	0.937	-0.34
06	-0.701	1.048	-0.693	-1.873
07	-1.9	1.241	-2.814	-1.1
08	-0.125	-0.028	-0.323	0.351
09	-0.295	0.817	-1.018	-0.462
10	-0.357	0.614	0.056	-0.931
11	-0.71	0.242	-0.129	0.304
12	-1.203	-0.258	0.966	-1.203
13	-2.296	-2.814	1.201	-0.661
14	-1.9	0.942	-0.363	-0.528
15	-2.146	1.225	-2.296	-0.974
16	-3.229	1.027	-1.501	-0.058
17	-3.131	1.201	-1.414	-0.942
18	-1.364	1.158	-2.111	-0.824
19	-1.927	-0.387	-0.317	0.895
20	-2.628	1.264	-1.927	-1.414
21	-0.542	1.067	-2.146	-0.931

Standard thresholds

P-value	Threshold
0.001	3.71251
0.0005	4.68686
0.0001	6.75406