MotifZN543.H12INVITRO.0.P.D
Gene (human)ZNF543
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length21
ConsensusYSbbKSCnhvbSGSCYCCKCM
GC content74.26%
Information content (bits; total / per base)14.121 / 0.672
Data sourcesChIP-Seq
Aligned words975

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.803 0.812 0.662 0.665 0.79 0.798 2.894 2.904 129.403 153.268
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF460-like {2.3.3.54} (TFClass)
TFClass IDTFClass: 2.3.3.54.4
HGNCHGNC:25281
MGI
EntrezGene (human)GeneID:125919
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN543_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q08ER8
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0147.0648.0116.0164.0
0262.0628.0143.0142.0
0349.0508.0138.0280.0
0499.0272.0312.0292.0
0542.0135.0625.0173.0
06120.0698.0121.036.0
0735.0847.013.080.0
08215.0237.0176.0347.0
09181.0554.087.0153.0
10170.0452.0258.095.0
11119.0311.0214.0331.0
1272.0188.0643.072.0
1323.013.0814.0125.0
1435.0628.0169.0143.0
1527.0834.023.091.0
168.0684.053.0230.0
179.0814.058.094.0
1861.0780.028.0106.0
1934.0165.0177.0599.0
2016.0867.034.058.0
21141.0712.027.095.0
PFM
ACGT
010.0480.6650.1190.168
020.0640.6440.1470.146
030.050.5210.1420.287
040.1020.2790.320.299
050.0430.1380.6410.177
060.1230.7160.1240.037
070.0360.8690.0130.082
080.2210.2430.1810.356
090.1860.5680.0890.157
100.1740.4640.2650.097
110.1220.3190.2190.339
120.0740.1930.6590.074
130.0240.0130.8350.128
140.0360.6440.1730.147
150.0280.8550.0240.093
160.0080.7020.0540.236
170.0090.8350.0590.096
180.0630.80.0290.109
190.0350.1690.1820.614
200.0160.8890.0350.059
210.1450.730.0280.097
PWM
ACGT
01-1.6170.973-0.735-0.393
02-1.3490.942-0.528-0.535
03-1.5770.731-0.5640.138
04-0.8910.1090.2450.179
05-1.725-0.5850.937-0.34
06-0.7011.048-0.693-1.873
07-1.91.241-2.814-1.1
08-0.125-0.028-0.3230.351
09-0.2950.817-1.018-0.462
10-0.3570.6140.056-0.931
11-0.710.242-0.1290.304
12-1.203-0.2580.966-1.203
13-2.296-2.8141.201-0.661
14-1.90.942-0.363-0.528
15-2.1461.225-2.296-0.974
16-3.2291.027-1.501-0.058
17-3.1311.201-1.414-0.942
18-1.3641.158-2.111-0.824
19-1.927-0.387-0.3170.895
20-2.6281.264-1.927-1.414
21-0.5421.067-2.146-0.931
Standard thresholds
P-value Threshold
0.001 3.71251
0.0005 4.68686
0.0001 6.75406