ZN540.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN540.H12RSNP.0.P.D
Gene (human)	ZNF540 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	bARACRYMMMCdSvRvYMvvhhv
GC content	47.6%
Information content (bits; total / per base)	12.621 / 0.549
Data sources	ChIP-Seq
Aligned words	156

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.761	0.761	0.636	0.636	0.864	0.864	5.151	5.151	16.886	16.886

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF283-like {2.3.3.67} (TFClass)
TFClass ID	TFClass: 2.3.3.67.4
HGNC	HGNC:25331
MGI
EntrezGene (human)	GeneID:163255 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN540_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8NDQ6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN540.H12RSNP.0.P.D.pcm
PWM	ZN540.H12RSNP.0.P.D.pwm
PFM	ZN540.H12RSNP.0.P.D.pfm
Alignment	ZN540.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN540.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN540.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN540.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN540.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN540.H12RSNP.0.P.D_homer_format_0.001.txt ZN540.H12RSNP.0.P.D_homer_format_0.0005.txt ZN540.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	24.0	60.0	26.0	46.0
02	126.0	21.0	6.0	3.0
03	121.0	14.0	17.0	4.0
04	127.0	5.0	7.0	17.0
05	16.0	137.0	1.0	2.0
06	90.0	8.0	55.0	3.0
07	6.0	66.0	8.0	76.0
08	81.0	62.0	2.0	11.0
09	33.0	100.0	15.0	8.0
10	120.0	26.0	6.0	4.0
11	34.0	119.0	1.0	2.0
12	67.0	18.0	23.0	48.0
13	13.0	33.0	100.0	10.0
14	67.0	41.0	36.0	12.0
15	101.0	21.0	31.0	3.0
16	81.0	25.0	36.0	14.0
17	14.0	95.0	18.0	29.0
18	67.0	65.0	4.0	20.0
19	34.0	67.0	39.0	16.0
20	70.0	37.0	32.0	17.0
21	62.0	54.0	17.0	23.0
22	54.0	28.0	16.0	58.0
23	29.0	71.0	39.0	17.0

PFM

	A	C	G	T
01	0.154	0.385	0.167	0.295
02	0.808	0.135	0.038	0.019
03	0.776	0.09	0.109	0.026
04	0.814	0.032	0.045	0.109
05	0.103	0.878	0.006	0.013
06	0.577	0.051	0.353	0.019
07	0.038	0.423	0.051	0.487
08	0.519	0.397	0.013	0.071
09	0.212	0.641	0.096	0.051
10	0.769	0.167	0.038	0.026
11	0.218	0.763	0.006	0.013
12	0.429	0.115	0.147	0.308
13	0.083	0.212	0.641	0.064
14	0.429	0.263	0.231	0.077
15	0.647	0.135	0.199	0.019
16	0.519	0.16	0.231	0.09
17	0.09	0.609	0.115	0.186
18	0.429	0.417	0.026	0.128
19	0.218	0.429	0.25	0.103
20	0.449	0.237	0.205	0.109
21	0.397	0.346	0.109	0.147
22	0.346	0.179	0.103	0.372
23	0.186	0.455	0.25	0.109

PWM

	A	C	G	T
01	-0.466	0.42	-0.39	0.16
02	1.151	-0.593	-1.713	-2.246
03	1.111	-0.97	-0.791	-2.035
04	1.159	-1.861	-1.584	-0.791
05	-0.847	1.234	-2.879	-2.513
06	0.818	-1.469	0.335	-2.246
07	-1.713	0.513	-1.469	0.652
08	0.714	0.452	-2.513	-1.189
09	-0.161	0.922	-0.907	-1.469
10	1.103	-0.39	-1.713	-2.035
11	-0.133	1.094	-2.879	-2.513
12	0.528	-0.737	-0.506	0.202
13	-1.038	-0.161	0.922	-1.274
14	0.528	0.048	-0.077	-1.11
15	0.932	-0.593	-0.222	-2.246
16	0.714	-0.427	-0.077	-0.97
17	-0.97	0.872	-0.737	-0.286
18	0.528	0.498	-2.035	-0.638
19	-0.133	0.528	0.0	-0.847
20	0.571	-0.051	-0.191	-0.791
21	0.452	0.317	-0.791	-0.506
22	0.317	-0.319	-0.847	0.387
23	-0.286	0.585	0.0	-0.791

Standard thresholds

P-value	Threshold
0.001	4.29941
0.0005	5.17901
0.0001	7.03116