Motif | ZN540.H12INVIVO.0.P.C |
Gene (human) | ZNF540 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | C |
Motif | ZN540.H12INVIVO.0.P.C |
Gene (human) | ZNF540 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | C |
Motif length | 23 |
Consensus | bARACRYMMMCdSvRvYMvvhhv |
GC content | 47.6% |
Information content (bits; total / per base) | 12.621 / 0.549 |
Data sources | ChIP-Seq |
Aligned words | 156 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 1 (2) | 0.761 | 0.761 | 0.636 | 0.636 | 0.864 | 0.864 | 5.151 | 5.151 | 16.886 | 16.886 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | C2H2 zinc finger factors {2.3} (TFClass) |
TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
TF subfamily | ZNF283-like {2.3.3.67} (TFClass) |
TFClass ID | TFClass: 2.3.3.67.4 |
HGNC | HGNC:25331 |
MGI | |
EntrezGene (human) | GeneID:163255 (SSTAR profile) |
EntrezGene (mouse) | |
UniProt ID (human) | ZN540_HUMAN |
UniProt ID (mouse) | |
UniProt AC (human) | Q8NDQ6 (TFClass) |
UniProt AC (mouse) | |
GRECO-DB-TF | yes |
ChIP-Seq | 1 human, 0 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | ZN540.H12INVIVO.0.P.C.pcm |
PWM | ZN540.H12INVIVO.0.P.C.pwm |
PFM | ZN540.H12INVIVO.0.P.C.pfm |
Alignment | ZN540.H12INVIVO.0.P.C.words.tsv |
Threshold to P-value map | ZN540.H12INVIVO.0.P.C.thr |
Motif in other formats | |
JASPAR format | ZN540.H12INVIVO.0.P.C_jaspar_format.txt |
MEME format | ZN540.H12INVIVO.0.P.C_meme_format.meme |
Transfac format | ZN540.H12INVIVO.0.P.C_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 24.0 | 60.0 | 26.0 | 46.0 |
02 | 126.0 | 21.0 | 6.0 | 3.0 |
03 | 121.0 | 14.0 | 17.0 | 4.0 |
04 | 127.0 | 5.0 | 7.0 | 17.0 |
05 | 16.0 | 137.0 | 1.0 | 2.0 |
06 | 90.0 | 8.0 | 55.0 | 3.0 |
07 | 6.0 | 66.0 | 8.0 | 76.0 |
08 | 81.0 | 62.0 | 2.0 | 11.0 |
09 | 33.0 | 100.0 | 15.0 | 8.0 |
10 | 120.0 | 26.0 | 6.0 | 4.0 |
11 | 34.0 | 119.0 | 1.0 | 2.0 |
12 | 67.0 | 18.0 | 23.0 | 48.0 |
13 | 13.0 | 33.0 | 100.0 | 10.0 |
14 | 67.0 | 41.0 | 36.0 | 12.0 |
15 | 101.0 | 21.0 | 31.0 | 3.0 |
16 | 81.0 | 25.0 | 36.0 | 14.0 |
17 | 14.0 | 95.0 | 18.0 | 29.0 |
18 | 67.0 | 65.0 | 4.0 | 20.0 |
19 | 34.0 | 67.0 | 39.0 | 16.0 |
20 | 70.0 | 37.0 | 32.0 | 17.0 |
21 | 62.0 | 54.0 | 17.0 | 23.0 |
22 | 54.0 | 28.0 | 16.0 | 58.0 |
23 | 29.0 | 71.0 | 39.0 | 17.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.154 | 0.385 | 0.167 | 0.295 |
02 | 0.808 | 0.135 | 0.038 | 0.019 |
03 | 0.776 | 0.09 | 0.109 | 0.026 |
04 | 0.814 | 0.032 | 0.045 | 0.109 |
05 | 0.103 | 0.878 | 0.006 | 0.013 |
06 | 0.577 | 0.051 | 0.353 | 0.019 |
07 | 0.038 | 0.423 | 0.051 | 0.487 |
08 | 0.519 | 0.397 | 0.013 | 0.071 |
09 | 0.212 | 0.641 | 0.096 | 0.051 |
10 | 0.769 | 0.167 | 0.038 | 0.026 |
11 | 0.218 | 0.763 | 0.006 | 0.013 |
12 | 0.429 | 0.115 | 0.147 | 0.308 |
13 | 0.083 | 0.212 | 0.641 | 0.064 |
14 | 0.429 | 0.263 | 0.231 | 0.077 |
15 | 0.647 | 0.135 | 0.199 | 0.019 |
16 | 0.519 | 0.16 | 0.231 | 0.09 |
17 | 0.09 | 0.609 | 0.115 | 0.186 |
18 | 0.429 | 0.417 | 0.026 | 0.128 |
19 | 0.218 | 0.429 | 0.25 | 0.103 |
20 | 0.449 | 0.237 | 0.205 | 0.109 |
21 | 0.397 | 0.346 | 0.109 | 0.147 |
22 | 0.346 | 0.179 | 0.103 | 0.372 |
23 | 0.186 | 0.455 | 0.25 | 0.109 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.466 | 0.42 | -0.39 | 0.16 |
02 | 1.151 | -0.593 | -1.713 | -2.246 |
03 | 1.111 | -0.97 | -0.791 | -2.035 |
04 | 1.159 | -1.861 | -1.584 | -0.791 |
05 | -0.847 | 1.234 | -2.879 | -2.513 |
06 | 0.818 | -1.469 | 0.335 | -2.246 |
07 | -1.713 | 0.513 | -1.469 | 0.652 |
08 | 0.714 | 0.452 | -2.513 | -1.189 |
09 | -0.161 | 0.922 | -0.907 | -1.469 |
10 | 1.103 | -0.39 | -1.713 | -2.035 |
11 | -0.133 | 1.094 | -2.879 | -2.513 |
12 | 0.528 | -0.737 | -0.506 | 0.202 |
13 | -1.038 | -0.161 | 0.922 | -1.274 |
14 | 0.528 | 0.048 | -0.077 | -1.11 |
15 | 0.932 | -0.593 | -0.222 | -2.246 |
16 | 0.714 | -0.427 | -0.077 | -0.97 |
17 | -0.97 | 0.872 | -0.737 | -0.286 |
18 | 0.528 | 0.498 | -2.035 | -0.638 |
19 | -0.133 | 0.528 | 0.0 | -0.847 |
20 | 0.571 | -0.051 | -0.191 | -0.791 |
21 | 0.452 | 0.317 | -0.791 | -0.506 |
22 | 0.317 | -0.319 | -0.847 | 0.387 |
23 | -0.286 | 0.585 | 0.0 | -0.791 |
P-value | Threshold |
---|---|
0.001 | 4.29941 |
0.0005 | 5.17901 |
0.0001 | 7.03116 |