MotifZN540.H12INVITRO.0.P.D
Gene (human)ZNF540
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length23
ConsensusbARACRYMMMCdSvRvYMvvhhv
GC content47.6%
Information content (bits; total / per base)12.621 / 0.549
Data sourcesChIP-Seq
Aligned words156

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (2) 0.761 0.761 0.636 0.636 0.864 0.864 5.151 5.151 16.886 16.886
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF283-like {2.3.3.67} (TFClass)
TFClass IDTFClass: 2.3.3.67.4
HGNCHGNC:25331
MGI
EntrezGene (human)GeneID:163255
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN540_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q8NDQ6
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0124.060.026.046.0
02126.021.06.03.0
03121.014.017.04.0
04127.05.07.017.0
0516.0137.01.02.0
0690.08.055.03.0
076.066.08.076.0
0881.062.02.011.0
0933.0100.015.08.0
10120.026.06.04.0
1134.0119.01.02.0
1267.018.023.048.0
1313.033.0100.010.0
1467.041.036.012.0
15101.021.031.03.0
1681.025.036.014.0
1714.095.018.029.0
1867.065.04.020.0
1934.067.039.016.0
2070.037.032.017.0
2162.054.017.023.0
2254.028.016.058.0
2329.071.039.017.0
PFM
ACGT
010.1540.3850.1670.295
020.8080.1350.0380.019
030.7760.090.1090.026
040.8140.0320.0450.109
050.1030.8780.0060.013
060.5770.0510.3530.019
070.0380.4230.0510.487
080.5190.3970.0130.071
090.2120.6410.0960.051
100.7690.1670.0380.026
110.2180.7630.0060.013
120.4290.1150.1470.308
130.0830.2120.6410.064
140.4290.2630.2310.077
150.6470.1350.1990.019
160.5190.160.2310.09
170.090.6090.1150.186
180.4290.4170.0260.128
190.2180.4290.250.103
200.4490.2370.2050.109
210.3970.3460.1090.147
220.3460.1790.1030.372
230.1860.4550.250.109
PWM
ACGT
01-0.4660.42-0.390.16
021.151-0.593-1.713-2.246
031.111-0.97-0.791-2.035
041.159-1.861-1.584-0.791
05-0.8471.234-2.879-2.513
060.818-1.4690.335-2.246
07-1.7130.513-1.4690.652
080.7140.452-2.513-1.189
09-0.1610.922-0.907-1.469
101.103-0.39-1.713-2.035
11-0.1331.094-2.879-2.513
120.528-0.737-0.5060.202
13-1.038-0.1610.922-1.274
140.5280.048-0.077-1.11
150.932-0.593-0.222-2.246
160.714-0.427-0.077-0.97
17-0.970.872-0.737-0.286
180.5280.498-2.035-0.638
19-0.1330.5280.0-0.847
200.571-0.051-0.191-0.791
210.4520.317-0.791-0.506
220.317-0.319-0.8470.387
23-0.2860.5850.0-0.791
Standard thresholds
P-value Threshold
0.001 4.29941
0.0005 5.17901
0.0001 7.03116