ZN534.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN534.H12INVITRO.1.P.D
Gene (human)	ZNF534 (GeneCards)
Gene synonyms (human)	KRBO3
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	31
Consensus	RRRRRRGGdKKnGGGGTWCTTGCCCCYCMSv
GC content	64.58%
Information content (bits; total / per base)	34.911 / 1.126
Data sources	ChIP-Seq
Aligned words	266

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.87	0.872	0.801	0.804	0.722	0.724	6.056	6.19	76.766	78.678

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.207
HGNC	HGNC:26337
MGI
EntrezGene (human)	GeneID:147658 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN534_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q76KX8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN534.H12INVITRO.1.P.D.pcm
PWM	ZN534.H12INVITRO.1.P.D.pwm
PFM	ZN534.H12INVITRO.1.P.D.pfm
Alignment	ZN534.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	ZN534.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	ZN534.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	ZN534.H12INVITRO.1.P.D_meme_format.meme
Transfac format	ZN534.H12INVITRO.1.P.D_transfac_format.txt
Homer format	ZN534.H12INVITRO.1.P.D_homer_format_0.001.txt ZN534.H12INVITRO.1.P.D_homer_format_0.0005.txt ZN534.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	180.0	11.0	67.0	8.0
02	77.0	17.0	159.0	13.0
03	176.0	10.0	58.0	22.0
04	184.0	16.0	51.0	15.0
05	115.0	17.0	123.0	11.0
06	52.0	19.0	186.0	9.0
07	15.0	10.0	233.0	8.0
08	20.0	13.0	221.0	12.0
09	35.0	17.0	91.0	123.0
10	4.0	47.0	59.0	156.0
11	18.0	14.0	155.0	79.0
12	55.0	16.0	140.0	55.0
13	5.0	3.0	254.0	4.0
14	28.0	7.0	229.0	2.0
15	3.0	5.0	257.0	1.0
16	14.0	8.0	238.0	6.0
17	3.0	8.0	2.0	253.0
18	59.0	2.0	55.0	150.0
19	0.0	266.0	0.0	0.0
20	0.0	0.0	0.0	266.0
21	0.0	20.0	0.0	246.0
22	0.0	0.0	251.0	15.0
23	0.0	266.0	0.0	0.0
24	0.0	264.0	0.0	2.0
25	0.0	264.0	0.0	2.0
26	2.0	259.0	1.0	4.0
27	4.0	145.0	6.0	111.0
28	0.0	224.0	10.0	32.0
29	141.0	110.0	5.0	10.0
30	13.0	123.0	122.0	8.0
31	87.0	123.0	48.0	8.0

PFM

	A	C	G	T
01	0.677	0.041	0.252	0.03
02	0.289	0.064	0.598	0.049
03	0.662	0.038	0.218	0.083
04	0.692	0.06	0.192	0.056
05	0.432	0.064	0.462	0.041
06	0.195	0.071	0.699	0.034
07	0.056	0.038	0.876	0.03
08	0.075	0.049	0.831	0.045
09	0.132	0.064	0.342	0.462
10	0.015	0.177	0.222	0.586
11	0.068	0.053	0.583	0.297
12	0.207	0.06	0.526	0.207
13	0.019	0.011	0.955	0.015
14	0.105	0.026	0.861	0.008
15	0.011	0.019	0.966	0.004
16	0.053	0.03	0.895	0.023
17	0.011	0.03	0.008	0.951
18	0.222	0.008	0.207	0.564
19	0.0	1.0	0.0	0.0
20	0.0	0.0	0.0	1.0
21	0.0	0.075	0.0	0.925
22	0.0	0.0	0.944	0.056
23	0.0	1.0	0.0	0.0
24	0.0	0.992	0.0	0.008
25	0.0	0.992	0.0	0.008
26	0.008	0.974	0.004	0.015
27	0.015	0.545	0.023	0.417
28	0.0	0.842	0.038	0.12
29	0.53	0.414	0.019	0.038
30	0.049	0.462	0.459	0.03
31	0.327	0.462	0.18	0.03

PWM

	A	C	G	T
01	0.983	-1.701	0.007	-1.978
02	0.144	-1.306	0.86	-1.551
03	0.96	-1.785	-0.134	-1.065
04	1.005	-1.362	-0.259	-1.421
05	0.539	-1.306	0.605	-1.701
06	-0.24	-1.203	1.015	-1.877
07	-1.421	-1.785	1.239	-1.978
08	-1.155	-1.551	1.186	-1.623
09	-0.624	-1.306	0.308	0.605
10	-2.532	-0.339	-0.117	0.841
11	-1.253	-1.484	0.834	0.169
12	-0.186	-1.362	0.734	-0.186
13	-2.362	-2.737	1.325	-2.532
14	-0.837	-2.09	1.222	-2.995
15	-2.737	-2.362	1.337	-3.344
16	-1.484	-1.978	1.26	-2.217
17	-2.737	-1.978	-2.995	1.321
18	-0.117	-2.995	-0.186	0.802
19	-3.884	1.371	-3.884	-3.884
20	-3.884	-3.884	-3.884	1.371
21	-3.884	-1.155	-3.884	1.293
22	-3.884	-3.884	1.313	-1.421
23	-3.884	1.371	-3.884	-3.884
24	-3.884	1.363	-3.884	-2.995
25	-3.884	1.363	-3.884	-2.995
26	-2.995	1.344	-3.344	-2.532
27	-2.532	0.768	-2.217	0.504
28	-3.884	1.2	-1.785	-0.71
29	0.741	0.495	-2.362	-1.785
30	-1.551	0.605	0.597	-1.978
31	0.264	0.605	-0.318	-1.978

Standard thresholds

P-value	Threshold
0.001	-7.88114
0.0005	-6.02259
0.0001	-2.02914