MotifZN534.H12INVITRO.1.P.D
Gene (human)ZNF534
(GeneCards)
Gene synonyms (human)KRBO3
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length31
ConsensusRRRRRRGGdKKnGGGGTWCTTGCCCCYCMSv
GC content64.58%
Information content (bits; total / per base)34.911 / 1.126
Data sourcesChIP-Seq
Aligned words266

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (2) 0.87 0.872 0.801 0.804 0.722 0.724 6.056 6.19 76.766 78.678
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.207
HGNCHGNC:26337
MGI
EntrezGene (human)GeneID:147658
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN534_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q76KX8
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01180.011.067.08.0
0277.017.0159.013.0
03176.010.058.022.0
04184.016.051.015.0
05115.017.0123.011.0
0652.019.0186.09.0
0715.010.0233.08.0
0820.013.0221.012.0
0935.017.091.0123.0
104.047.059.0156.0
1118.014.0155.079.0
1255.016.0140.055.0
135.03.0254.04.0
1428.07.0229.02.0
153.05.0257.01.0
1614.08.0238.06.0
173.08.02.0253.0
1859.02.055.0150.0
190.0266.00.00.0
200.00.00.0266.0
210.020.00.0246.0
220.00.0251.015.0
230.0266.00.00.0
240.0264.00.02.0
250.0264.00.02.0
262.0259.01.04.0
274.0145.06.0111.0
280.0224.010.032.0
29141.0110.05.010.0
3013.0123.0122.08.0
3187.0123.048.08.0
PFM
ACGT
010.6770.0410.2520.03
020.2890.0640.5980.049
030.6620.0380.2180.083
040.6920.060.1920.056
050.4320.0640.4620.041
060.1950.0710.6990.034
070.0560.0380.8760.03
080.0750.0490.8310.045
090.1320.0640.3420.462
100.0150.1770.2220.586
110.0680.0530.5830.297
120.2070.060.5260.207
130.0190.0110.9550.015
140.1050.0260.8610.008
150.0110.0190.9660.004
160.0530.030.8950.023
170.0110.030.0080.951
180.2220.0080.2070.564
190.01.00.00.0
200.00.00.01.0
210.00.0750.00.925
220.00.00.9440.056
230.01.00.00.0
240.00.9920.00.008
250.00.9920.00.008
260.0080.9740.0040.015
270.0150.5450.0230.417
280.00.8420.0380.12
290.530.4140.0190.038
300.0490.4620.4590.03
310.3270.4620.180.03
PWM
ACGT
010.983-1.7010.007-1.978
020.144-1.3060.86-1.551
030.96-1.785-0.134-1.065
041.005-1.362-0.259-1.421
050.539-1.3060.605-1.701
06-0.24-1.2031.015-1.877
07-1.421-1.7851.239-1.978
08-1.155-1.5511.186-1.623
09-0.624-1.3060.3080.605
10-2.532-0.339-0.1170.841
11-1.253-1.4840.8340.169
12-0.186-1.3620.734-0.186
13-2.362-2.7371.325-2.532
14-0.837-2.091.222-2.995
15-2.737-2.3621.337-3.344
16-1.484-1.9781.26-2.217
17-2.737-1.978-2.9951.321
18-0.117-2.995-0.1860.802
19-3.8841.371-3.884-3.884
20-3.884-3.884-3.8841.371
21-3.884-1.155-3.8841.293
22-3.884-3.8841.313-1.421
23-3.8841.371-3.884-3.884
24-3.8841.363-3.884-2.995
25-3.8841.363-3.884-2.995
26-2.9951.344-3.344-2.532
27-2.5320.768-2.2170.504
28-3.8841.2-1.785-0.71
290.7410.495-2.362-1.785
30-1.5510.6050.597-1.978
310.2640.605-0.318-1.978
Standard thresholds
P-value Threshold
0.001 -7.88114
0.0005 -6.02259
0.0001 -2.02914