MotifZN534.H12INVITRO.0.P.D
Gene (human)ZNF534
(GeneCards)
Gene synonyms (human)KRBO3
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length18
ConsensusSvSRYKCTYKCCCMbYvb
GC content68.82%
Information content (bits; total / per base)16.479 / 0.916
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (2) 0.943 0.944 0.875 0.878 0.942 0.943 5.057 5.111 410.377 414.26
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.207
HGNCHGNC:26337
MGI
EntrezGene (human)GeneID:147658
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN534_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q76KX8
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0169.0143.0647.0141.0
02219.0223.0487.071.0
03101.0151.0653.095.0
04186.0123.0670.021.0
0547.0264.096.0593.0
0691.018.0150.0741.0
075.0992.01.02.0
083.086.00.0911.0
092.0491.03.0504.0
105.07.0649.0339.0
112.0994.01.03.0
121.0876.04.0119.0
133.0982.04.011.0
1496.0771.055.078.0
1551.0533.0151.0265.0
1645.0702.079.0174.0
17274.0509.0117.0100.0
1896.0491.0264.0149.0
PFM
ACGT
010.0690.1430.6470.141
020.2190.2230.4870.071
030.1010.1510.6530.095
040.1860.1230.670.021
050.0470.2640.0960.593
060.0910.0180.150.741
070.0050.9920.0010.002
080.0030.0860.00.911
090.0020.4910.0030.504
100.0050.0070.6490.339
110.0020.9940.0010.003
120.0010.8760.0040.119
130.0030.9820.0040.011
140.0960.7710.0550.078
150.0510.5330.1510.265
160.0450.7020.0790.174
170.2740.5090.1170.1
180.0960.4910.2640.149
PWM
ACGT
01-1.27-0.5530.947-0.567
02-0.131-0.1130.663-1.242
03-0.896-0.50.956-0.956
04-0.293-0.7020.982-2.405
05-1.6420.054-0.9460.86
06-0.999-2.546-0.5061.082
07-3.6221.373-4.525-4.213
08-3.975-1.054-4.9821.288
09-4.2130.672-3.9750.698
10-3.622-3.3620.950.303
11-4.2131.375-4.525-3.975
12-4.5251.249-3.783-0.735
13-3.9751.363-3.783-2.985
14-0.9461.122-1.49-1.15
15-1.5630.753-0.50.058
16-1.6841.028-1.137-0.359
170.0910.707-0.752-0.906
18-0.9460.6720.054-0.513
Standard thresholds
P-value Threshold
0.001 2.11751
0.0005 3.43171
0.0001 6.16296