ZN534.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN534.H12INVITRO.0.P.D
Gene (human)	ZNF534 (GeneCards)
Gene synonyms (human)	KRBO3
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	SvSRYKCTYKCCCMbYvb
GC content	68.82%
Information content (bits; total / per base)	16.479 / 0.916
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.943	0.944	0.875	0.878	0.942	0.943	5.057	5.111	410.377	414.26

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.207
HGNC	HGNC:26337
MGI
EntrezGene (human)	GeneID:147658 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN534_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q76KX8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN534.H12INVITRO.0.P.D.pcm
PWM	ZN534.H12INVITRO.0.P.D.pwm
PFM	ZN534.H12INVITRO.0.P.D.pfm
Alignment	ZN534.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN534.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN534.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN534.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN534.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN534.H12INVITRO.0.P.D_homer_format_0.001.txt ZN534.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN534.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	69.0	143.0	647.0	141.0
02	219.0	223.0	487.0	71.0
03	101.0	151.0	653.0	95.0
04	186.0	123.0	670.0	21.0
05	47.0	264.0	96.0	593.0
06	91.0	18.0	150.0	741.0
07	5.0	992.0	1.0	2.0
08	3.0	86.0	0.0	911.0
09	2.0	491.0	3.0	504.0
10	5.0	7.0	649.0	339.0
11	2.0	994.0	1.0	3.0
12	1.0	876.0	4.0	119.0
13	3.0	982.0	4.0	11.0
14	96.0	771.0	55.0	78.0
15	51.0	533.0	151.0	265.0
16	45.0	702.0	79.0	174.0
17	274.0	509.0	117.0	100.0
18	96.0	491.0	264.0	149.0

PFM

	A	C	G	T
01	0.069	0.143	0.647	0.141
02	0.219	0.223	0.487	0.071
03	0.101	0.151	0.653	0.095
04	0.186	0.123	0.67	0.021
05	0.047	0.264	0.096	0.593
06	0.091	0.018	0.15	0.741
07	0.005	0.992	0.001	0.002
08	0.003	0.086	0.0	0.911
09	0.002	0.491	0.003	0.504
10	0.005	0.007	0.649	0.339
11	0.002	0.994	0.001	0.003
12	0.001	0.876	0.004	0.119
13	0.003	0.982	0.004	0.011
14	0.096	0.771	0.055	0.078
15	0.051	0.533	0.151	0.265
16	0.045	0.702	0.079	0.174
17	0.274	0.509	0.117	0.1
18	0.096	0.491	0.264	0.149

PWM

	A	C	G	T
01	-1.27	-0.553	0.947	-0.567
02	-0.131	-0.113	0.663	-1.242
03	-0.896	-0.5	0.956	-0.956
04	-0.293	-0.702	0.982	-2.405
05	-1.642	0.054	-0.946	0.86
06	-0.999	-2.546	-0.506	1.082
07	-3.622	1.373	-4.525	-4.213
08	-3.975	-1.054	-4.982	1.288
09	-4.213	0.672	-3.975	0.698
10	-3.622	-3.362	0.95	0.303
11	-4.213	1.375	-4.525	-3.975
12	-4.525	1.249	-3.783	-0.735
13	-3.975	1.363	-3.783	-2.985
14	-0.946	1.122	-1.49	-1.15
15	-1.563	0.753	-0.5	0.058
16	-1.684	1.028	-1.137	-0.359
17	0.091	0.707	-0.752	-0.906
18	-0.946	0.672	0.054	-0.513

Standard thresholds

P-value	Threshold
0.001	2.11751
0.0005	3.43171
0.0001	6.16296