ZN530.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN530.H12INVITRO.0.P.D
Gene (human)	ZNF530 (GeneCards)
Gene synonyms (human)	KIAA1508
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	17
Consensus	ShKSCCCTndCChTbCY
GC content	66.85%
Information content (bits; total / per base)	16.029 / 0.943
Data sources	ChIP-Seq
Aligned words	540

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (10)	0.832	0.905	0.71	0.805	0.856	0.95	5.03	5.865	57.886	246.481

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.153
HGNC	HGNC:29297
MGI
EntrezGene (human)	GeneID:348327 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN530_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6P9A1 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN530.H12INVITRO.0.P.D.pcm
PWM	ZN530.H12INVITRO.0.P.D.pwm
PFM	ZN530.H12INVITRO.0.P.D.pfm
Alignment	ZN530.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN530.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN530.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN530.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN530.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN530.H12INVITRO.0.P.D_homer_format_0.001.txt ZN530.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN530.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	60.0	364.0	67.0	49.0
02	87.0	152.0	86.0	215.0
03	32.0	24.0	405.0	79.0
04	28.0	319.0	184.0	9.0
05	13.0	494.0	17.0	16.0
06	2.0	492.0	2.0	44.0
07	1.0	530.0	5.0	4.0
08	25.0	44.0	5.0	466.0
09	80.0	153.0	128.0	179.0
10	92.0	31.0	206.0	211.0
11	3.0	526.0	2.0	9.0
12	2.0	516.0	6.0	16.0
13	100.0	160.0	22.0	258.0
14	8.0	3.0	24.0	505.0
15	28.0	79.0	225.0	208.0
16	7.0	472.0	30.0	31.0
17	77.0	323.0	41.0	99.0

PFM

	A	C	G	T
01	0.111	0.674	0.124	0.091
02	0.161	0.281	0.159	0.398
03	0.059	0.044	0.75	0.146
04	0.052	0.591	0.341	0.017
05	0.024	0.915	0.031	0.03
06	0.004	0.911	0.004	0.081
07	0.002	0.981	0.009	0.007
08	0.046	0.081	0.009	0.863
09	0.148	0.283	0.237	0.331
10	0.17	0.057	0.381	0.391
11	0.006	0.974	0.004	0.017
12	0.004	0.956	0.011	0.03
13	0.185	0.296	0.041	0.478
14	0.015	0.006	0.044	0.935
15	0.052	0.146	0.417	0.385
16	0.013	0.874	0.056	0.057
17	0.143	0.598	0.076	0.183

PWM

	A	C	G	T
01	-0.797	0.985	-0.689	-0.993
02	-0.433	0.117	-0.444	0.461
03	-1.403	-1.675	1.091	-0.528
04	-1.53	0.853	0.307	-2.559
05	-2.238	1.289	-1.995	-2.051
06	-3.643	1.285	-3.643	-1.098
07	-3.972	1.359	-3.034	-3.199
08	-1.637	-1.098	-3.034	1.231
09	-0.515	0.124	-0.053	0.279
10	-0.378	-1.433	0.419	0.442
11	-3.397	1.351	-3.643	-2.559
12	-3.643	1.332	-2.892	-2.051
13	-0.296	0.168	-1.757	0.642
14	-2.658	-3.397	-1.675	1.311
15	-1.53	-0.528	0.506	0.428
16	-2.768	1.243	-1.465	-1.433
17	-0.553	0.866	-1.166	-0.306

Standard thresholds

P-value	Threshold
0.001	2.71451
0.0005	3.88621
0.0001	6.35181