ZN529.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN529.H12INVITRO.0.P.D
Gene (human)	ZNF529 (GeneCards)
Gene synonyms (human)	KIAA1615
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	31
Consensus	bYvWdKRCYCTTYAYCCAGYTTSCCMbWvTG
GC content	49.61%
Information content (bits; total / per base)	31.998 / 1.032
Data sources	ChIP-Seq
Aligned words	694

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.852	0.995	0.85	0.994	0.863	0.998	12.078	17.439	285.62	440.602

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.145
HGNC	HGNC:29328
MGI
EntrezGene (human)	GeneID:57711 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN529_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6P280 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN529.H12INVITRO.0.P.D.pcm
PWM	ZN529.H12INVITRO.0.P.D.pwm
PFM	ZN529.H12INVITRO.0.P.D.pfm
Alignment	ZN529.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN529.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN529.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN529.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN529.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN529.H12INVITRO.0.P.D_homer_format_0.001.txt ZN529.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN529.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	43.0	248.0	307.0	96.0
02	37.0	196.0	21.0	440.0
03	158.0	344.0	127.0	65.0
04	61.0	54.0	24.0	555.0
05	135.0	28.0	205.0	326.0
06	40.0	32.0	294.0	328.0
07	455.0	50.0	168.0	21.0
08	14.0	524.0	4.0	152.0
09	12.0	319.0	2.0	361.0
10	10.0	664.0	7.0	13.0
11	16.0	34.0	4.0	640.0
12	5.0	8.0	13.0	668.0
13	4.0	292.0	5.0	393.0
14	622.0	12.0	52.0	8.0
15	7.0	230.0	5.0	452.0
16	2.0	666.0	15.0	11.0
17	1.0	682.0	0.0	11.0
18	635.0	17.0	15.0	27.0
19	93.0	12.0	574.0	15.0
20	7.0	361.0	9.0	317.0
21	11.0	63.0	10.0	610.0
22	10.0	55.0	5.0	624.0
23	14.0	386.0	282.0	12.0
24	12.0	660.0	2.0	20.0
25	12.0	659.0	0.0	23.0
26	324.0	358.0	2.0	10.0
27	34.0	343.0	135.0	182.0
28	335.0	18.0	29.0	312.0
29	263.0	291.0	82.0	58.0
30	54.0	19.0	61.0	560.0
31	59.0	13.0	576.0	46.0

PFM

	A	C	G	T
01	0.062	0.357	0.442	0.138
02	0.053	0.282	0.03	0.634
03	0.228	0.496	0.183	0.094
04	0.088	0.078	0.035	0.8
05	0.195	0.04	0.295	0.47
06	0.058	0.046	0.424	0.473
07	0.656	0.072	0.242	0.03
08	0.02	0.755	0.006	0.219
09	0.017	0.46	0.003	0.52
10	0.014	0.957	0.01	0.019
11	0.023	0.049	0.006	0.922
12	0.007	0.012	0.019	0.963
13	0.006	0.421	0.007	0.566
14	0.896	0.017	0.075	0.012
15	0.01	0.331	0.007	0.651
16	0.003	0.96	0.022	0.016
17	0.001	0.983	0.0	0.016
18	0.915	0.024	0.022	0.039
19	0.134	0.017	0.827	0.022
20	0.01	0.52	0.013	0.457
21	0.016	0.091	0.014	0.879
22	0.014	0.079	0.007	0.899
23	0.02	0.556	0.406	0.017
24	0.017	0.951	0.003	0.029
25	0.017	0.95	0.0	0.033
26	0.467	0.516	0.003	0.014
27	0.049	0.494	0.195	0.262
28	0.483	0.026	0.042	0.45
29	0.379	0.419	0.118	0.084
30	0.078	0.027	0.088	0.807
31	0.085	0.019	0.83	0.066

PWM

	A	C	G	T
01	-1.367	0.354	0.567	-0.584
02	-1.511	0.121	-2.046	0.925
03	-0.093	0.68	-0.309	-0.966
04	-1.028	-1.147	-1.922	1.156
05	-0.248	-1.777	0.165	0.626
06	-1.437	-1.65	0.524	0.632
07	0.958	-1.221	-0.032	-2.046
08	-2.416	1.099	-3.436	-0.131
09	-2.553	0.605	-3.875	0.728
10	-2.711	1.335	-3.01	-2.482
11	-2.296	-1.592	-3.436	1.298
12	-3.273	-2.9	-2.482	1.341
13	-3.436	0.517	-3.273	0.812
14	1.27	-2.553	-1.183	-2.9
15	-3.01	0.28	-3.273	0.952
16	-3.875	1.338	-2.354	-2.629
17	-4.196	1.362	-4.674	-2.629
18	1.291	-2.24	-2.354	-1.811
19	-0.616	-2.553	1.19	-2.354
20	-3.01	0.728	-2.801	0.598
21	-2.629	-0.997	-2.711	1.251
22	-2.711	-1.129	-3.273	1.273
23	-2.416	0.795	0.482	-2.553
24	-2.553	1.329	-3.875	-2.091
25	-2.553	1.328	-4.674	-1.961
26	0.62	0.72	-3.875	-2.711
27	-1.592	0.677	-0.248	0.047
28	0.653	-2.188	-1.743	0.583
29	0.413	0.513	-0.739	-1.077
30	-1.147	-2.139	-1.028	1.165
31	-1.061	-2.482	1.193	-1.302

Standard thresholds

P-value	Threshold
0.001	-6.28334
0.0005	-4.50639
0.0001	-0.69904