ZN528.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN528.H12INVIVO.0.P.B
Gene (human)	ZNF528 (GeneCards)
Gene synonyms (human)	KIAA1827
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	20
Consensus	nvvRRGGAAGYMWYYKCYvd
GC content	52.52%
Information content (bits; total / per base)	15.21 / 0.761
Data sources	ChIP-Seq
Aligned words	988

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.881	0.916	0.87	0.911	0.858	0.902	7.042	8.342	342.481	421.824

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.189
HGNC	HGNC:29384
MGI
EntrezGene (human)	GeneID:84436 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN528_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q3MIS6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN528.H12INVIVO.0.P.B.pcm
PWM	ZN528.H12INVIVO.0.P.B.pwm
PFM	ZN528.H12INVIVO.0.P.B.pfm
Alignment	ZN528.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	ZN528.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZN528.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	ZN528.H12INVIVO.0.P.B_meme_format.meme
Transfac format	ZN528.H12INVIVO.0.P.B_transfac_format.txt
Homer format	ZN528.H12INVIVO.0.P.B_homer_format_0.001.txt ZN528.H12INVIVO.0.P.B_homer_format_0.0005.txt ZN528.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	167.0	506.0	148.0	167.0
02	191.0	391.0	240.0	166.0
03	306.0	422.0	170.0	90.0
04	668.0	75.0	175.0	70.0
05	160.0	47.0	641.0	140.0
06	60.0	10.0	908.0	10.0
07	45.0	3.0	935.0	5.0
08	905.0	38.0	36.0	9.0
09	856.0	34.0	84.0	14.0
10	15.0	11.0	858.0	104.0
11	64.0	544.0	101.0	279.0
12	219.0	726.0	22.0	21.0
13	721.0	54.0	95.0	118.0
14	26.0	235.0	62.0	665.0
15	88.0	157.0	61.0	682.0
16	11.0	164.0	184.0	629.0
17	23.0	866.0	39.0	60.0
18	67.0	194.0	115.0	612.0
19	141.0	262.0	448.0	137.0
20	500.0	138.0	179.0	171.0

PFM

	A	C	G	T
01	0.169	0.512	0.15	0.169
02	0.193	0.396	0.243	0.168
03	0.31	0.427	0.172	0.091
04	0.676	0.076	0.177	0.071
05	0.162	0.048	0.649	0.142
06	0.061	0.01	0.919	0.01
07	0.046	0.003	0.946	0.005
08	0.916	0.038	0.036	0.009
09	0.866	0.034	0.085	0.014
10	0.015	0.011	0.868	0.105
11	0.065	0.551	0.102	0.282
12	0.222	0.735	0.022	0.021
13	0.73	0.055	0.096	0.119
14	0.026	0.238	0.063	0.673
15	0.089	0.159	0.062	0.69
16	0.011	0.166	0.186	0.637
17	0.023	0.877	0.039	0.061
18	0.068	0.196	0.116	0.619
19	0.143	0.265	0.453	0.139
20	0.506	0.14	0.181	0.173

PWM

	A	C	G	T
01	-0.388	0.714	-0.508	-0.388
02	-0.255	0.457	-0.029	-0.394
03	0.213	0.533	-0.37	-0.998
04	0.991	-1.176	-0.342	-1.244
05	-0.43	-1.63	0.949	-0.562
06	-1.394	-3.055	1.297	-3.055
07	-1.672	-3.964	1.326	-3.611
08	1.293	-1.834	-1.886	-3.144
09	1.238	-1.941	-1.065	-2.761
10	-2.7	-2.973	1.24	-0.856
11	-1.331	0.786	-0.884	0.121
12	-0.119	1.074	-2.35	-2.393
13	1.067	-1.496	-0.944	-0.731
14	-2.194	-0.049	-1.362	0.986
15	-1.02	-0.449	-1.378	1.011
16	-2.973	-0.406	-0.292	0.931
17	-2.309	1.25	-1.81	-1.394
18	-1.286	-0.24	-0.757	0.903
19	-0.555	0.059	0.592	-0.584
20	0.702	-0.577	-0.319	-0.365

Standard thresholds

P-value	Threshold
0.001	3.25886
0.0005	4.32136
0.0001	6.56456