ZN527.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN527.H12INVIVO.0.P.C
Gene (human)	ZNF527 (GeneCards)
Gene synonyms (human)	KIAA1829
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	18
Consensus	YYKCKGTTKCWKSCvhYb
GC content	54.19%
Information content (bits; total / per base)	14.505 / 0.806
Data sources	ChIP-Seq
Aligned words	122

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.891	0.891	0.858	0.858	0.915	0.915	6.021	6.021	26.602	26.602

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.144
HGNC	HGNC:29385
MGI
EntrezGene (human)	GeneID:84503 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN527_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8NB42 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN527.H12INVIVO.0.P.C.pcm
PWM	ZN527.H12INVIVO.0.P.C.pwm
PFM	ZN527.H12INVIVO.0.P.C.pfm
Alignment	ZN527.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN527.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN527.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN527.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN527.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN527.H12INVIVO.0.P.C_homer_format_0.001.txt ZN527.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN527.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	6.0	25.0	13.0	78.0
02	8.0	36.0	12.0	66.0
03	6.0	15.0	31.0	70.0
04	9.0	105.0	4.0	4.0
05	3.0	10.0	21.0	88.0
06	2.0	9.0	108.0	3.0
07	6.0	1.0	0.0	115.0
08	0.0	51.0	0.0	71.0
09	22.0	2.0	73.0	25.0
10	11.0	107.0	1.0	3.0
11	15.0	10.0	9.0	88.0
12	2.0	7.0	56.0	57.0
13	26.0	28.0	65.0	3.0
14	0.0	105.0	5.0	12.0
15	61.0	21.0	29.0	11.0
16	57.0	42.0	8.0	15.0
17	3.0	75.0	4.0	40.0
18	9.0	91.0	11.0	11.0

PFM

	A	C	G	T
01	0.049	0.205	0.107	0.639
02	0.066	0.295	0.098	0.541
03	0.049	0.123	0.254	0.574
04	0.074	0.861	0.033	0.033
05	0.025	0.082	0.172	0.721
06	0.016	0.074	0.885	0.025
07	0.049	0.008	0.0	0.943
08	0.0	0.418	0.0	0.582
09	0.18	0.016	0.598	0.205
10	0.09	0.877	0.008	0.025
11	0.123	0.082	0.074	0.721
12	0.016	0.057	0.459	0.467
13	0.213	0.23	0.533	0.025
14	0.0	0.861	0.041	0.098
15	0.5	0.172	0.238	0.09
16	0.467	0.344	0.066	0.123
17	0.025	0.615	0.033	0.328
18	0.074	0.746	0.09	0.09

PWM

	A	C	G	T
01	-1.482	-0.191	-0.803	0.916
02	-1.237	0.16	-0.876	0.751
03	-1.482	-0.671	0.016	0.809
04	-1.134	1.209	-1.807	-1.807
05	-2.021	-1.04	-0.356	1.035
06	-2.293	-1.134	1.237	-2.021
07	-1.482	-2.667	-3.273	1.299
08	-3.273	0.499	-3.273	0.823
09	-0.312	-2.293	0.85	-0.191
10	-0.955	1.228	-2.667	-2.021
11	-0.671	-1.04	-1.134	1.035
12	-2.293	-1.352	0.59	0.608
13	-0.153	-0.082	0.736	-2.021
14	-3.273	1.209	-1.632	-0.876
15	0.674	-0.356	-0.048	-0.955
16	0.608	0.31	-1.237	-0.671
17	-2.021	0.877	-1.807	0.262
18	-1.134	1.068	-0.955	-0.955

Standard thresholds

P-value	Threshold
0.001	3.86776
0.0005	4.83836
0.0001	6.88216