ZN519.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN519.H12INVITRO.0.P.D
Gene (human)	ZNF519 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	20
Consensus	GSYRCvRCYGChGCCKCCCv
GC content	83.08%
Information content (bits; total / per base)	21.172 / 1.059
Data sources	ChIP-Seq
Aligned words	979

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.91	0.911	0.798	0.799	0.931	0.931	6.329	6.349	412.177	416.469

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.68
HGNC	HGNC:30574
MGI
EntrezGene (human)	GeneID:162655 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN519_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8TB69 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN519.H12INVITRO.0.P.D.pcm
PWM	ZN519.H12INVITRO.0.P.D.pwm
PFM	ZN519.H12INVITRO.0.P.D.pfm
Alignment	ZN519.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN519.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN519.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN519.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN519.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN519.H12INVITRO.0.P.D_homer_format_0.001.txt ZN519.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN519.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	57.0	43.0	845.0	34.0
02	56.0	611.0	290.0	22.0
03	32.0	695.0	62.0	190.0
04	136.0	58.0	717.0	68.0
05	23.0	882.0	51.0	23.0
06	257.0	439.0	156.0	127.0
07	82.0	63.0	776.0	58.0
08	21.0	909.0	24.0	25.0
09	49.0	463.0	97.0	370.0
10	43.0	40.0	823.0	73.0
11	3.0	963.0	5.0	8.0
12	333.0	457.0	54.0	135.0
13	22.0	28.0	871.0	58.0
14	2.0	959.0	8.0	10.0
15	4.0	734.0	5.0	236.0
16	71.0	4.0	744.0	160.0
17	0.0	964.0	7.0	8.0
18	5.0	935.0	8.0	31.0
19	38.0	787.0	127.0	27.0
20	325.0	338.0	226.0	90.0

PFM

	A	C	G	T
01	0.058	0.044	0.863	0.035
02	0.057	0.624	0.296	0.022
03	0.033	0.71	0.063	0.194
04	0.139	0.059	0.732	0.069
05	0.023	0.901	0.052	0.023
06	0.263	0.448	0.159	0.13
07	0.084	0.064	0.793	0.059
08	0.021	0.928	0.025	0.026
09	0.05	0.473	0.099	0.378
10	0.044	0.041	0.841	0.075
11	0.003	0.984	0.005	0.008
12	0.34	0.467	0.055	0.138
13	0.022	0.029	0.89	0.059
14	0.002	0.98	0.008	0.01
15	0.004	0.75	0.005	0.241
16	0.073	0.004	0.76	0.163
17	0.0	0.985	0.007	0.008
18	0.005	0.955	0.008	0.032
19	0.039	0.804	0.13	0.028
20	0.332	0.345	0.231	0.092

PWM

	A	C	G	T
01	-1.434	-1.707	1.234	-1.931
02	-1.452	0.911	0.169	-2.341
03	-1.989	1.039	-1.353	-0.251
04	-0.582	-1.418	1.07	-1.263
05	-2.3	1.277	-1.542	-2.3
06	0.049	0.581	-0.446	-0.65
07	-1.08	-1.337	1.149	-1.418
08	-2.384	1.307	-2.26	-2.222
09	-1.581	0.634	-0.915	0.411
10	-1.707	-1.776	1.208	-1.193
11	-3.955	1.365	-3.602	-3.233
12	0.306	0.621	-1.487	-0.589
13	-2.341	-2.115	1.264	-1.418
14	-4.193	1.36	-3.233	-3.046
15	-3.763	1.094	-3.602	-0.036
16	-1.221	-3.763	1.107	-0.421
17	-4.964	1.366	-3.341	-3.233
18	-3.602	1.335	-3.233	-2.019
19	-1.825	1.163	-0.65	-2.15
20	0.282	0.321	-0.079	-0.988

Standard thresholds

P-value	Threshold
0.001	0.20356
0.0005	1.59556
0.0001	4.55381