ZN510.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN510.H12INVIVO.0.P.C
Gene (human)	ZNF510 (GeneCards)
Gene synonyms (human)	KIAA0972
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	WMWYWTCTTAKTdGTTYCCTCAT
GC content	27.45%
Information content (bits; total / per base)	23.027 / 1.001
Data sources	ChIP-Seq
Aligned words	310

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (6)	0.905	0.934	0.901	0.933	0.913	0.937	8.796	9.606	373.31	595.824

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF37A-like {2.3.4.25} (TFClass)
TFClass ID	TFClass: 2.3.4.25.6
HGNC	HGNC:29161
MGI
EntrezGene (human)	GeneID:22869 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN510_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9Y2H8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN510.H12INVIVO.0.P.C.pcm
PWM	ZN510.H12INVIVO.0.P.C.pwm
PFM	ZN510.H12INVIVO.0.P.C.pfm
Alignment	ZN510.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN510.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN510.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN510.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN510.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN510.H12INVIVO.0.P.C_homer_format_0.001.txt ZN510.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN510.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	41.0	32.0	21.0	216.0
02	212.0	49.0	7.0	42.0
03	165.0	15.0	14.0	116.0
04	7.0	201.0	2.0	100.0
05	174.0	11.0	22.0	103.0
06	85.0	1.0	0.0	224.0
07	0.0	198.0	0.0	112.0
08	9.0	26.0	5.0	270.0
09	1.0	2.0	0.0	307.0
10	271.0	3.0	10.0	26.0
11	0.0	83.0	88.0	139.0
12	18.0	38.0	2.0	252.0
13	121.0	2.0	87.0	100.0
14	94.0	3.0	211.0	2.0
15	49.0	11.0	8.0	242.0
16	3.0	9.0	14.0	284.0
17	5.0	87.0	2.0	216.0
18	94.0	216.0	0.0	0.0
19	0.0	180.0	0.0	130.0
20	31.0	6.0	12.0	261.0
21	0.0	215.0	0.0	95.0
22	242.0	4.0	6.0	58.0
23	4.0	44.0	10.0	252.0

PFM

	A	C	G	T
01	0.132	0.103	0.068	0.697
02	0.684	0.158	0.023	0.135
03	0.532	0.048	0.045	0.374
04	0.023	0.648	0.006	0.323
05	0.561	0.035	0.071	0.332
06	0.274	0.003	0.0	0.723
07	0.0	0.639	0.0	0.361
08	0.029	0.084	0.016	0.871
09	0.003	0.006	0.0	0.99
10	0.874	0.01	0.032	0.084
11	0.0	0.268	0.284	0.448
12	0.058	0.123	0.006	0.813
13	0.39	0.006	0.281	0.323
14	0.303	0.01	0.681	0.006
15	0.158	0.035	0.026	0.781
16	0.01	0.029	0.045	0.916
17	0.016	0.281	0.006	0.697
18	0.303	0.697	0.0	0.0
19	0.0	0.581	0.0	0.419
20	0.1	0.019	0.039	0.842
21	0.0	0.694	0.0	0.306
22	0.781	0.013	0.019	0.187
23	0.013	0.142	0.032	0.813

PWM

	A	C	G	T
01	-0.621	-0.859	-1.258	1.013
02	0.995	-0.448	-2.236	-0.597
03	0.746	-1.569	-1.632	0.397
04	-2.236	0.942	-3.135	0.251
05	0.799	-1.848	-1.214	0.28
06	0.091	-3.479	-4.008	1.049
07	-4.008	0.927	-4.008	0.363
08	-2.024	-1.057	-2.507	1.235
09	-3.479	-3.135	-4.008	1.363
10	1.239	-2.879	-1.932	-1.057
11	-4.008	0.067	0.125	0.576
12	-1.402	-0.694	-3.135	1.166
13	0.439	-3.135	0.114	0.251
14	0.19	-2.879	0.99	-3.135
15	-0.448	-1.848	-2.124	1.126
16	-2.879	-2.024	-1.632	1.285
17	-2.507	0.114	-3.135	1.013
18	0.19	1.013	-4.008	-4.008
19	-4.008	0.832	-4.008	0.51
20	-0.889	-2.363	-1.771	1.201
21	-4.008	1.009	-4.008	0.2
22	1.126	-2.676	-2.363	-0.284
23	-2.676	-0.552	-1.932	1.166

Standard thresholds

P-value	Threshold
0.001	-0.72109
0.0005	0.78586
0.0001	3.96566