ZN506.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN506.H12INVIVO.0.P.C
Gene (human)	ZNF506 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	YbTGGGGGCTCvYMCvbSdhhhb
GC content	61.15%
Information content (bits; total / per base)	18.95 / 0.824
Data sources	ChIP-Seq
Aligned words	962

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.974	0.975	0.951	0.959	0.978	0.979	7.638	7.683	747.567	766.658

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.64
HGNC	HGNC:23780
MGI
EntrezGene (human)	GeneID:440515 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN506_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q5JVG8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN506.H12INVIVO.0.P.C.pcm
PWM	ZN506.H12INVIVO.0.P.C.pwm
PFM	ZN506.H12INVIVO.0.P.C.pfm
Alignment	ZN506.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN506.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN506.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN506.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN506.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN506.H12INVIVO.0.P.C_homer_format_0.001.txt ZN506.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN506.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	97.0	149.0	135.0	581.0
02	67.0	292.0	212.0	391.0
03	34.0	40.0	19.0	869.0
04	43.0	10.0	874.0	35.0
05	26.0	2.0	912.0	22.0
06	29.0	3.0	868.0	62.0
07	27.0	3.0	924.0	8.0
08	10.0	4.0	947.0	1.0
09	1.0	958.0	3.0	0.0
10	0.0	7.0	0.0	955.0
11	60.0	791.0	27.0	84.0
12	390.0	211.0	338.0	23.0
13	30.0	342.0	126.0	464.0
14	304.0	510.0	52.0	96.0
15	65.0	797.0	31.0	69.0
16	339.0	309.0	166.0	148.0
17	109.0	130.0	465.0	258.0
18	109.0	191.0	597.0	65.0
19	472.0	117.0	121.0	252.0
20	181.0	351.0	88.0	342.0
21	307.0	346.0	122.0	187.0
22	155.0	231.0	138.0	438.0
23	134.0	397.0	173.0	258.0

PFM

	A	C	G	T
01	0.101	0.155	0.14	0.604
02	0.07	0.304	0.22	0.406
03	0.035	0.042	0.02	0.903
04	0.045	0.01	0.909	0.036
05	0.027	0.002	0.948	0.023
06	0.03	0.003	0.902	0.064
07	0.028	0.003	0.96	0.008
08	0.01	0.004	0.984	0.001
09	0.001	0.996	0.003	0.0
10	0.0	0.007	0.0	0.993
11	0.062	0.822	0.028	0.087
12	0.405	0.219	0.351	0.024
13	0.031	0.356	0.131	0.482
14	0.316	0.53	0.054	0.1
15	0.068	0.828	0.032	0.072
16	0.352	0.321	0.173	0.154
17	0.113	0.135	0.483	0.268
18	0.113	0.199	0.621	0.068
19	0.491	0.122	0.126	0.262
20	0.188	0.365	0.091	0.356
21	0.319	0.36	0.127	0.194
22	0.161	0.24	0.143	0.455
23	0.139	0.413	0.18	0.268

PWM

	A	C	G	T
01	-0.898	-0.474	-0.572	0.878
02	-1.26	0.193	-0.125	0.483
03	-1.914	-1.759	-2.459	1.279
04	-1.689	-3.029	1.285	-1.887
05	-2.168	-4.177	1.328	-2.324
06	-2.065	-3.939	1.278	-1.335
07	-2.132	-3.939	1.341	-3.216
08	-3.029	-3.746	1.365	-4.49
09	-4.49	1.377	-3.939	-4.949
10	-4.949	-3.325	-4.949	1.374
11	-1.367	1.186	-2.132	-1.039
12	0.481	-0.13	0.338	-2.282
13	-2.033	0.35	-0.64	0.654
14	0.233	0.748	-1.506	-0.908
15	-1.289	1.193	-2.002	-1.231
16	0.341	0.249	-0.368	-0.481
17	-0.783	-0.609	0.656	0.07
18	-0.783	-0.229	0.905	-1.289
19	0.671	-0.713	-0.68	0.046
20	-0.282	0.376	-0.993	0.35
21	0.243	0.362	-0.672	-0.25
22	-0.435	-0.04	-0.55	0.596
23	-0.579	0.498	-0.327	0.07

Standard thresholds

P-value	Threshold
0.001	1.01131
0.0005	2.38516
0.0001	5.27696