ZN502.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN502.H12INVIVO.0.P.C
Gene (human)	ZNF502 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	21
Consensus	RYYdGGWChdbTGCAGYRKYh
GC content	55.62%
Information content (bits; total / per base)	16.874 / 0.804
Data sources	ChIP-Seq
Aligned words	203

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.62	0.68	0.606	0.685	0.62	0.665	4.799	6.263	107.854	132.854

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.175
HGNC	HGNC:23718
MGI
EntrezGene (human)	GeneID:91392 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN502_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8TBZ5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN502.H12INVIVO.0.P.C.pcm
PWM	ZN502.H12INVIVO.0.P.C.pwm
PFM	ZN502.H12INVIVO.0.P.C.pfm
Alignment	ZN502.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN502.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN502.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN502.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN502.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN502.H12INVIVO.0.P.C_homer_format_0.001.txt ZN502.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN502.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	42.0	10.0	146.0	5.0
02	23.0	138.0	9.0	33.0
03	23.0	54.0	5.0	121.0
04	83.0	28.0	40.0	52.0
05	41.0	1.0	154.0	7.0
06	5.0	4.0	187.0	7.0
07	145.0	17.0	18.0	23.0
08	7.0	164.0	2.0	30.0
09	28.0	84.0	21.0	70.0
10	65.0	18.0	85.0	35.0
11	22.0	40.0	97.0	44.0
12	39.0	3.0	4.0	157.0
13	7.0	1.0	195.0	0.0
14	4.0	182.0	6.0	11.0
15	191.0	4.0	1.0	7.0
16	14.0	3.0	171.0	15.0
17	16.0	32.0	14.0	141.0
18	146.0	18.0	27.0	12.0
19	9.0	23.0	137.0	34.0
20	14.0	123.0	20.0	46.0
21	71.0	83.0	2.0	47.0

PFM

	A	C	G	T
01	0.207	0.049	0.719	0.025
02	0.113	0.68	0.044	0.163
03	0.113	0.266	0.025	0.596
04	0.409	0.138	0.197	0.256
05	0.202	0.005	0.759	0.034
06	0.025	0.02	0.921	0.034
07	0.714	0.084	0.089	0.113
08	0.034	0.808	0.01	0.148
09	0.138	0.414	0.103	0.345
10	0.32	0.089	0.419	0.172
11	0.108	0.197	0.478	0.217
12	0.192	0.015	0.02	0.773
13	0.034	0.005	0.961	0.0
14	0.02	0.897	0.03	0.054
15	0.941	0.02	0.005	0.034
16	0.069	0.015	0.842	0.074
17	0.079	0.158	0.069	0.695
18	0.719	0.089	0.133	0.059
19	0.044	0.113	0.675	0.167
20	0.069	0.606	0.099	0.227
21	0.35	0.409	0.01	0.232

PWM

	A	C	G	T
01	-0.184	-1.525	1.04	-2.108
02	-0.761	0.984	-1.618	-0.417
03	-0.761	0.061	-2.108	0.854
04	0.482	-0.574	-0.231	0.024
05	-0.207	-3.108	1.093	-1.833
06	-2.108	-2.28	1.285	-1.833
07	1.033	-1.044	-0.991	-0.761
08	-1.833	1.155	-2.75	-0.508
09	-0.574	0.494	-0.847	0.315
10	0.242	-0.991	0.505	-0.36
11	-0.803	-0.231	0.636	-0.139
12	-0.256	-2.488	-2.28	1.112
13	-1.833	-3.108	1.327	-3.669
14	-2.28	1.259	-1.961	-1.441
15	1.306	-2.28	-3.108	-1.833
16	-1.223	-2.488	1.197	-1.16
17	-1.1	-0.446	-1.223	1.005
18	1.04	-0.991	-0.609	-1.363
19	-1.618	-0.761	0.977	-0.388
20	-1.223	0.87	-0.893	-0.096
21	0.328	0.482	-2.75	-0.075

Standard thresholds

P-value	Threshold
0.001	2.97256
0.0005	4.05831
0.0001	6.36176