ZN492.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN492.H12INVITRO.0.P.D
Gene (human)	ZNF492 (GeneCards)
Gene synonyms (human)	KIAA1473, ZNF115
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	20
Consensus	GARMAMbAAAARGGMWnnnd
GC content	40.14%
Information content (bits; total / per base)	19.159 / 0.958
Data sources	ChIP-Seq
Aligned words	290

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.959	0.959	0.943	0.943	0.965	0.965	6.911	6.911	171.398	171.398

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF98-like {2.3.3.60} (TFClass)
TFClass ID	TFClass: 2.3.3.60.2
HGNC	HGNC:23707
MGI
EntrezGene (human)	GeneID:57615 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN492_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9P255 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN492.H12INVITRO.0.P.D.pcm
PWM	ZN492.H12INVITRO.0.P.D.pwm
PFM	ZN492.H12INVITRO.0.P.D.pfm
Alignment	ZN492.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN492.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN492.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN492.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN492.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN492.H12INVITRO.0.P.D_homer_format_0.001.txt ZN492.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN492.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	69.0	1.0	220.0	0.0
02	279.0	3.0	1.0	7.0
03	93.0	17.0	180.0	0.0
04	50.0	192.0	36.0	12.0
05	276.0	0.0	11.0	3.0
06	174.0	79.0	36.0	1.0
07	39.0	119.0	55.0	77.0
08	282.0	3.0	2.0	3.0
09	252.0	7.0	27.0	4.0
10	287.0	1.0	2.0	0.0
11	289.0	0.0	1.0	0.0
12	209.0	6.0	62.0	13.0
13	3.0	0.0	287.0	0.0
14	15.0	2.0	264.0	9.0
15	80.0	164.0	10.0	36.0
16	181.0	36.0	12.0	61.0
17	98.0	51.0	78.0	63.0
18	101.0	55.0	55.0	79.0
19	81.0	49.0	84.0	76.0
20	113.0	45.0	75.0	57.0

PFM

	A	C	G	T
01	0.238	0.003	0.759	0.0
02	0.962	0.01	0.003	0.024
03	0.321	0.059	0.621	0.0
04	0.172	0.662	0.124	0.041
05	0.952	0.0	0.038	0.01
06	0.6	0.272	0.124	0.003
07	0.134	0.41	0.19	0.266
08	0.972	0.01	0.007	0.01
09	0.869	0.024	0.093	0.014
10	0.99	0.003	0.007	0.0
11	0.997	0.0	0.003	0.0
12	0.721	0.021	0.214	0.045
13	0.01	0.0	0.99	0.0
14	0.052	0.007	0.91	0.031
15	0.276	0.566	0.034	0.124
16	0.624	0.124	0.041	0.21
17	0.338	0.176	0.269	0.217
18	0.348	0.19	0.19	0.272
19	0.279	0.169	0.29	0.262
20	0.39	0.155	0.259	0.197

PWM

	A	C	G	T
01	-0.049	-3.42	1.097	-3.954
02	1.333	-2.817	-3.42	-2.173
03	0.245	-1.39	0.898	-3.954
04	-0.363	0.962	-0.681	-1.706
05	1.323	-3.954	-1.784	-2.817
06	0.864	0.084	-0.681	-3.42
07	-0.604	0.488	-0.27	0.059
08	1.344	-2.817	-3.074	-2.817
09	1.232	-2.173	-0.956	-2.613
10	1.361	-3.42	-3.074	-3.954
11	1.368	-3.954	-3.42	-3.954
12	1.046	-2.299	-0.153	-1.635
13	-2.817	-3.954	1.361	-3.954
14	-1.505	-3.074	1.278	-1.959
15	0.097	0.806	-1.868	-0.681
16	0.903	-0.681	-1.706	-0.169
17	0.296	-0.344	0.072	-0.138
18	0.326	-0.27	-0.27	0.084
19	0.109	-0.383	0.145	0.046
20	0.437	-0.465	0.033	-0.235

Standard thresholds

P-value	Threshold
0.001	1.08971
0.0005	2.45686
0.0001	5.34286