MotifZN490.H12INVIVO.0.P.C
Gene (human)ZNF490
(GeneCards)
Gene synonyms (human)KIAA1198
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length23
ConsensusTGWAGRCAGCAKAYMRWTGGRTC
GC content46.78%
Information content (bits; total / per base)29.12 / 1.266
Data sourcesChIP-Seq
Aligned words619

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.972 0.985 0.969 0.982 0.969 0.983 14.42 14.862 929.31 947.538
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF763-like {2.3.3.33} (TFClass)
TFClass IDTFClass: 2.3.3.33.11
HGNCHGNC:23705
MGI
EntrezGene (human)GeneID:57474
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN490_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q9ULM2
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0110.03.020.0586.0
023.00.0614.02.0
03300.021.015.0283.0
04588.07.011.013.0
0567.05.0515.032.0
06296.05.0314.04.0
071.0618.00.00.0
08615.00.02.02.0
09137.01.0478.03.0
101.0616.02.00.0
11619.00.00.00.0
1243.052.0183.0341.0
13596.05.017.01.0
1425.0280.04.0310.0
15233.0334.09.043.0
16342.055.0186.036.0
17129.065.030.0395.0
1825.020.017.0557.0
1949.03.0555.012.0
2064.05.0535.015.0
2180.011.0458.070.0
224.036.04.0575.0
2312.0509.040.058.0
PFM
ACGT
010.0160.0050.0320.947
020.0050.00.9920.003
030.4850.0340.0240.457
040.950.0110.0180.021
050.1080.0080.8320.052
060.4780.0080.5070.006
070.0020.9980.00.0
080.9940.00.0030.003
090.2210.0020.7720.005
100.0020.9950.0030.0
111.00.00.00.0
120.0690.0840.2960.551
130.9630.0080.0270.002
140.040.4520.0060.501
150.3760.540.0150.069
160.5530.0890.30.058
170.2080.1050.0480.638
180.040.0320.0270.9
190.0790.0050.8970.019
200.1030.0080.8640.024
210.1290.0180.740.113
220.0060.0580.0060.929
230.0190.8220.0650.094
PWM
ACGT
01-2.601-3.525-1.9791.324
02-3.525-4.5781.37-3.769
030.657-1.934-2.2420.599
041.327-2.9-2.518-2.371
05-0.824-3.1641.195-1.537
060.644-3.1640.702-3.328
07-4.0941.377-4.578-4.578
081.372-4.578-3.769-3.769
09-0.12-4.0941.121-3.525
10-4.0941.374-3.769-4.578
111.379-4.578-4.578-4.578
12-1.254-1.070.1660.784
131.341-3.164-2.129-4.094
14-1.7710.588-3.3280.69
150.4060.764-2.691-1.254
160.787-1.0160.182-1.425
17-0.18-0.853-1.5990.931
18-1.771-1.979-2.1291.273
19-1.128-3.5251.27-2.442
20-0.868-3.1641.233-2.242
21-0.65-2.5181.078-0.781
22-3.328-1.425-3.3281.305
23-2.4421.183-1.324-0.964
Standard thresholds
P-value Threshold
0.001 -5.92099
0.0005 -4.08864
0.0001 -0.17049