ZN490.H12CORE.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN490.H12CORE.0.P.C
Gene (human)	ZNF490 (GeneCards)
Gene synonyms (human)	KIAA1198
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	TGWAGRCAGCAKAYMRWTGGRTC
GC content	46.78%
Information content (bits; total / per base)	29.12 / 1.266
Data sources	ChIP-Seq
Aligned words	619

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.972	0.985	0.969	0.982	0.969	0.983	14.42	14.862	929.31	947.538

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.11
HGNC	HGNC:23705
MGI
EntrezGene (human)	GeneID:57474 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN490_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9ULM2 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN490.H12CORE.0.P.C.pcm
PWM	ZN490.H12CORE.0.P.C.pwm
PFM	ZN490.H12CORE.0.P.C.pfm
Alignment	ZN490.H12CORE.0.P.C.words.tsv
Threshold to P-value map	ZN490.H12CORE.0.P.C.thr
Motif in other formats
JASPAR format	ZN490.H12CORE.0.P.C_jaspar_format.txt
MEME format	ZN490.H12CORE.0.P.C_meme_format.meme
Transfac format	ZN490.H12CORE.0.P.C_transfac_format.txt
Homer format	ZN490.H12CORE.0.P.C_homer_format_0.001.txt ZN490.H12CORE.0.P.C_homer_format_0.0005.txt ZN490.H12CORE.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	10.0	3.0	20.0	586.0
02	3.0	0.0	614.0	2.0
03	300.0	21.0	15.0	283.0
04	588.0	7.0	11.0	13.0
05	67.0	5.0	515.0	32.0
06	296.0	5.0	314.0	4.0
07	1.0	618.0	0.0	0.0
08	615.0	0.0	2.0	2.0
09	137.0	1.0	478.0	3.0
10	1.0	616.0	2.0	0.0
11	619.0	0.0	0.0	0.0
12	43.0	52.0	183.0	341.0
13	596.0	5.0	17.0	1.0
14	25.0	280.0	4.0	310.0
15	233.0	334.0	9.0	43.0
16	342.0	55.0	186.0	36.0
17	129.0	65.0	30.0	395.0
18	25.0	20.0	17.0	557.0
19	49.0	3.0	555.0	12.0
20	64.0	5.0	535.0	15.0
21	80.0	11.0	458.0	70.0
22	4.0	36.0	4.0	575.0
23	12.0	509.0	40.0	58.0

PFM

	A	C	G	T
01	0.016	0.005	0.032	0.947
02	0.005	0.0	0.992	0.003
03	0.485	0.034	0.024	0.457
04	0.95	0.011	0.018	0.021
05	0.108	0.008	0.832	0.052
06	0.478	0.008	0.507	0.006
07	0.002	0.998	0.0	0.0
08	0.994	0.0	0.003	0.003
09	0.221	0.002	0.772	0.005
10	0.002	0.995	0.003	0.0
11	1.0	0.0	0.0	0.0
12	0.069	0.084	0.296	0.551
13	0.963	0.008	0.027	0.002
14	0.04	0.452	0.006	0.501
15	0.376	0.54	0.015	0.069
16	0.553	0.089	0.3	0.058
17	0.208	0.105	0.048	0.638
18	0.04	0.032	0.027	0.9
19	0.079	0.005	0.897	0.019
20	0.103	0.008	0.864	0.024
21	0.129	0.018	0.74	0.113
22	0.006	0.058	0.006	0.929
23	0.019	0.822	0.065	0.094

PWM

	A	C	G	T
01	-2.601	-3.525	-1.979	1.324
02	-3.525	-4.578	1.37	-3.769
03	0.657	-1.934	-2.242	0.599
04	1.327	-2.9	-2.518	-2.371
05	-0.824	-3.164	1.195	-1.537
06	0.644	-3.164	0.702	-3.328
07	-4.094	1.377	-4.578	-4.578
08	1.372	-4.578	-3.769	-3.769
09	-0.12	-4.094	1.121	-3.525
10	-4.094	1.374	-3.769	-4.578
11	1.379	-4.578	-4.578	-4.578
12	-1.254	-1.07	0.166	0.784
13	1.341	-3.164	-2.129	-4.094
14	-1.771	0.588	-3.328	0.69
15	0.406	0.764	-2.691	-1.254
16	0.787	-1.016	0.182	-1.425
17	-0.18	-0.853	-1.599	0.931
18	-1.771	-1.979	-2.129	1.273
19	-1.128	-3.525	1.27	-2.442
20	-0.868	-3.164	1.233	-2.242
21	-0.65	-2.518	1.078	-0.781
22	-3.328	-1.425	-3.328	1.305
23	-2.442	1.183	-1.324	-0.964

Standard thresholds

P-value	Threshold
0.001	-5.92099
0.0005	-4.08864
0.0001	-0.17049