ZN485.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN485.H12INVITRO.0.P.D
Gene (human)	ZNF485 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	YShRvvYSYTCCCRhAYdTCCCY
GC content	54.65%
Information content (bits; total / per base)	20.646 / 0.898
Data sources	ChIP-Seq
Aligned words	827

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.936	0.941	0.884	0.894	0.964	0.969	8.752	8.848	644.46	685.959

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.113
HGNC	HGNC:23440
MGI
EntrezGene (human)	GeneID:220992 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN485_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8NCK3 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN485.H12INVITRO.0.P.D.pcm
PWM	ZN485.H12INVITRO.0.P.D.pwm
PFM	ZN485.H12INVITRO.0.P.D.pfm
Alignment	ZN485.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN485.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN485.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN485.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN485.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN485.H12INVITRO.0.P.D_homer_format_0.001.txt ZN485.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN485.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	78.0	84.0	74.0	591.0
02	58.0	560.0	109.0	100.0
03	360.0	103.0	87.0	277.0
04	81.0	42.0	652.0	52.0
05	180.0	311.0	284.0	52.0
06	259.0	195.0	288.0	85.0
07	45.0	91.0	63.0	628.0
08	79.0	574.0	131.0	43.0
09	15.0	513.0	19.0	280.0
10	15.0	16.0	71.0	725.0
11	20.0	707.0	93.0	7.0
12	9.0	714.0	2.0	102.0
13	32.0	687.0	38.0	70.0
14	631.0	25.0	140.0	31.0
15	207.0	268.0	96.0	256.0
16	726.0	70.0	11.0	20.0
17	62.0	148.0	10.0	607.0
18	383.0	52.0	178.0	214.0
19	5.0	79.0	5.0	738.0
20	0.0	824.0	1.0	2.0
21	23.0	621.0	5.0	178.0
22	9.0	794.0	0.0	24.0
23	17.0	552.0	8.0	250.0

PFM

	A	C	G	T
01	0.094	0.102	0.089	0.715
02	0.07	0.677	0.132	0.121
03	0.435	0.125	0.105	0.335
04	0.098	0.051	0.788	0.063
05	0.218	0.376	0.343	0.063
06	0.313	0.236	0.348	0.103
07	0.054	0.11	0.076	0.759
08	0.096	0.694	0.158	0.052
09	0.018	0.62	0.023	0.339
10	0.018	0.019	0.086	0.877
11	0.024	0.855	0.112	0.008
12	0.011	0.863	0.002	0.123
13	0.039	0.831	0.046	0.085
14	0.763	0.03	0.169	0.037
15	0.25	0.324	0.116	0.31
16	0.878	0.085	0.013	0.024
17	0.075	0.179	0.012	0.734
18	0.463	0.063	0.215	0.259
19	0.006	0.096	0.006	0.892
20	0.0	0.996	0.001	0.002
21	0.028	0.751	0.006	0.215
22	0.011	0.96	0.0	0.029
23	0.021	0.667	0.01	0.302

PWM

	A	C	G	T
01	-0.962	-0.889	-1.013	1.045
02	-1.251	0.991	-0.633	-0.718
03	0.551	-0.689	-0.855	0.29
04	-0.925	-1.563	1.143	-1.357
05	-0.137	0.406	0.315	-1.357
06	0.224	-0.058	0.329	-0.877
07	-1.496	-0.81	-1.17	1.106
08	-0.949	1.016	-0.452	-1.54
09	-2.525	0.904	-2.31	0.301
10	-2.525	-2.467	-1.054	1.249
11	-2.263	1.224	-0.789	-3.179
12	-2.971	1.234	-4.037	-0.698
13	-1.823	1.195	-1.659	-1.067
14	1.11	-2.056	-0.386	-1.853
15	0.001	0.258	-0.758	0.212
16	1.25	-1.067	-2.8	-2.263
17	-1.186	-0.331	-2.882	1.072
18	0.613	-1.357	-0.148	0.034
19	-3.441	-0.949	-3.441	1.267
20	-4.821	1.377	-4.354	-4.037
21	-2.134	1.094	-3.441	-0.148
22	-2.971	1.34	-4.821	-2.094
23	-2.412	0.977	-3.07	0.189

Standard thresholds

P-value	Threshold
0.001	0.71711
0.0005	2.06676
0.0001	4.92151