MotifZN484.H12INVIVO.0.P.C
Gene (human)ZNF484
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length23
ConsensusRRRGGAbWGARGMACWdRbdMMR
GC content46.28%
Information content (bits; total / per base)18.244 / 0.793
Data sourcesChIP-Seq
Aligned words379

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.894 0.902 0.875 0.88 0.916 0.92 8.765 8.769 137.652 143.149
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF81-like {2.3.3.68} (TFClass)
TFClass IDTFClass: 2.3.3.68.4
HGNCHGNC:23385
MGI
EntrezGene (human)GeneID:83744
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN484_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q5JVG2
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01237.041.065.036.0
02134.019.0210.016.0
03131.017.0193.038.0
0434.08.0327.010.0
0565.04.0307.03.0
06338.013.025.03.0
0758.0150.076.095.0
08248.026.039.066.0
0919.08.0339.013.0
10311.025.029.014.0
11129.013.0208.029.0
1219.03.0341.016.0
13257.079.021.022.0
14337.02.035.05.0
1522.0341.07.09.0
16286.027.018.048.0
1779.041.0111.0148.0
1859.026.0278.016.0
1936.0122.047.0174.0
2058.042.066.0213.0
21256.070.038.015.0
22292.042.040.05.0
23245.034.061.039.0
PFM
ACGT
010.6250.1080.1720.095
020.3540.050.5540.042
030.3460.0450.5090.1
040.090.0210.8630.026
050.1720.0110.810.008
060.8920.0340.0660.008
070.1530.3960.2010.251
080.6540.0690.1030.174
090.050.0210.8940.034
100.8210.0660.0770.037
110.340.0340.5490.077
120.050.0080.90.042
130.6780.2080.0550.058
140.8890.0050.0920.013
150.0580.90.0180.024
160.7550.0710.0470.127
170.2080.1080.2930.391
180.1560.0690.7340.042
190.0950.3220.1240.459
200.1530.1110.1740.562
210.6750.1850.10.04
220.770.1110.1060.013
230.6460.090.1610.103
PWM
ACGT
010.908-0.818-0.37-0.943
020.342-1.5470.787-1.705
030.32-1.650.704-0.891
04-0.998-2.3171.228-2.126
05-0.37-2.8651.165-3.066
061.261-1.894-1.29-3.066
07-0.4810.454-0.2170.003
080.953-1.253-0.866-0.355
09-1.547-2.3171.264-1.894
101.178-1.29-1.15-1.827
110.304-1.8940.778-1.15
12-1.547-3.0661.269-1.705
130.988-0.179-1.454-1.41
141.258-3.318-0.97-2.697
15-1.411.269-2.429-2.217
161.094-1.217-1.597-0.665
17-0.179-0.8180.1560.44
18-0.464-1.2531.066-1.705
19-0.9430.249-0.6860.601
20-0.481-0.794-0.3550.801
210.984-0.297-0.891-1.764
221.115-0.794-0.841-2.697
230.941-0.998-0.432-0.866
Standard thresholds
P-value Threshold
0.001 2.41396
0.0005 3.54386
0.0001 5.95431