ZN484.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN484.H12INVITRO.0.P.D
Gene (human)	ZNF484 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	RRRGGAbWGARGMACWdRbdMMR
GC content	46.28%
Information content (bits; total / per base)	18.244 / 0.793
Data sources	ChIP-Seq
Aligned words	379

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.894	0.902	0.875	0.88	0.916	0.92	8.765	8.769	137.652	143.149

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF81-like {2.3.3.68} (TFClass)
TFClass ID	TFClass: 2.3.3.68.4
HGNC	HGNC:23385
MGI
EntrezGene (human)	GeneID:83744 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN484_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q5JVG2 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN484.H12INVITRO.0.P.D.pcm
PWM	ZN484.H12INVITRO.0.P.D.pwm
PFM	ZN484.H12INVITRO.0.P.D.pfm
Alignment	ZN484.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN484.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN484.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN484.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN484.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN484.H12INVITRO.0.P.D_homer_format_0.001.txt ZN484.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN484.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	237.0	41.0	65.0	36.0
02	134.0	19.0	210.0	16.0
03	131.0	17.0	193.0	38.0
04	34.0	8.0	327.0	10.0
05	65.0	4.0	307.0	3.0
06	338.0	13.0	25.0	3.0
07	58.0	150.0	76.0	95.0
08	248.0	26.0	39.0	66.0
09	19.0	8.0	339.0	13.0
10	311.0	25.0	29.0	14.0
11	129.0	13.0	208.0	29.0
12	19.0	3.0	341.0	16.0
13	257.0	79.0	21.0	22.0
14	337.0	2.0	35.0	5.0
15	22.0	341.0	7.0	9.0
16	286.0	27.0	18.0	48.0
17	79.0	41.0	111.0	148.0
18	59.0	26.0	278.0	16.0
19	36.0	122.0	47.0	174.0
20	58.0	42.0	66.0	213.0
21	256.0	70.0	38.0	15.0
22	292.0	42.0	40.0	5.0
23	245.0	34.0	61.0	39.0

PFM

	A	C	G	T
01	0.625	0.108	0.172	0.095
02	0.354	0.05	0.554	0.042
03	0.346	0.045	0.509	0.1
04	0.09	0.021	0.863	0.026
05	0.172	0.011	0.81	0.008
06	0.892	0.034	0.066	0.008
07	0.153	0.396	0.201	0.251
08	0.654	0.069	0.103	0.174
09	0.05	0.021	0.894	0.034
10	0.821	0.066	0.077	0.037
11	0.34	0.034	0.549	0.077
12	0.05	0.008	0.9	0.042
13	0.678	0.208	0.055	0.058
14	0.889	0.005	0.092	0.013
15	0.058	0.9	0.018	0.024
16	0.755	0.071	0.047	0.127
17	0.208	0.108	0.293	0.391
18	0.156	0.069	0.734	0.042
19	0.095	0.322	0.124	0.459
20	0.153	0.111	0.174	0.562
21	0.675	0.185	0.1	0.04
22	0.77	0.111	0.106	0.013
23	0.646	0.09	0.161	0.103

PWM

	A	C	G	T
01	0.908	-0.818	-0.37	-0.943
02	0.342	-1.547	0.787	-1.705
03	0.32	-1.65	0.704	-0.891
04	-0.998	-2.317	1.228	-2.126
05	-0.37	-2.865	1.165	-3.066
06	1.261	-1.894	-1.29	-3.066
07	-0.481	0.454	-0.217	0.003
08	0.953	-1.253	-0.866	-0.355
09	-1.547	-2.317	1.264	-1.894
10	1.178	-1.29	-1.15	-1.827
11	0.304	-1.894	0.778	-1.15
12	-1.547	-3.066	1.269	-1.705
13	0.988	-0.179	-1.454	-1.41
14	1.258	-3.318	-0.97	-2.697
15	-1.41	1.269	-2.429	-2.217
16	1.094	-1.217	-1.597	-0.665
17	-0.179	-0.818	0.156	0.44
18	-0.464	-1.253	1.066	-1.705
19	-0.943	0.249	-0.686	0.601
20	-0.481	-0.794	-0.355	0.801
21	0.984	-0.297	-0.891	-1.764
22	1.115	-0.794	-0.841	-2.697
23	0.941	-0.998	-0.432	-0.866

Standard thresholds

P-value	Threshold
0.001	2.41396
0.0005	3.54386
0.0001	5.95431