ZN483.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN483.H12RSNP.0.P.D
Gene (human)	ZNF483 (GeneCards)
Gene synonyms (human)	KIAA1962, ZKSCAN16
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	dvWGRGAGCTGCARnnnM
GC content	60.85%
Information content (bits; total / per base)	18.724 / 1.04
Data sources	ChIP-Seq
Aligned words	575

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.966	0.986	0.958	0.972	0.965	0.988	7.042	7.426	372.347	387.066

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.101
HGNC	HGNC:23384
MGI
EntrezGene (human)	GeneID:158399 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN483_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8TF39 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN483.H12RSNP.0.P.D.pcm
PWM	ZN483.H12RSNP.0.P.D.pwm
PFM	ZN483.H12RSNP.0.P.D.pfm
Alignment	ZN483.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN483.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN483.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN483.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN483.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN483.H12RSNP.0.P.D_homer_format_0.001.txt ZN483.H12RSNP.0.P.D_homer_format_0.0005.txt ZN483.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	173.0	56.0	210.0	136.0
02	71.0	278.0	196.0	30.0
03	438.0	42.0	38.0	57.0
04	9.0	7.0	553.0	6.0
05	255.0	2.0	302.0	16.0
06	12.0	5.0	555.0	3.0
07	572.0	0.0	2.0	1.0
08	5.0	0.0	570.0	0.0
09	3.0	567.0	2.0	3.0
10	11.0	16.0	1.0	547.0
11	87.0	9.0	473.0	6.0
12	1.0	539.0	7.0	28.0
13	522.0	21.0	18.0	14.0
14	68.0	42.0	439.0	26.0
15	85.0	118.0	204.0	168.0
16	166.0	155.0	139.0	115.0
17	149.0	192.0	116.0	118.0
18	97.0	372.0	52.0	54.0

PFM

	A	C	G	T
01	0.301	0.097	0.365	0.237
02	0.123	0.483	0.341	0.052
03	0.762	0.073	0.066	0.099
04	0.016	0.012	0.962	0.01
05	0.443	0.003	0.525	0.028
06	0.021	0.009	0.965	0.005
07	0.995	0.0	0.003	0.002
08	0.009	0.0	0.991	0.0
09	0.005	0.986	0.003	0.005
10	0.019	0.028	0.002	0.951
11	0.151	0.016	0.823	0.01
12	0.002	0.937	0.012	0.049
13	0.908	0.037	0.031	0.024
14	0.118	0.073	0.763	0.045
15	0.148	0.205	0.355	0.292
16	0.289	0.27	0.242	0.2
17	0.259	0.334	0.202	0.205
18	0.169	0.647	0.09	0.094

PWM

	A	C	G	T
01	0.183	-0.926	0.376	-0.055
02	-0.694	0.654	0.307	-1.526
03	1.107	-1.204	-1.301	-0.909
04	-2.619	-2.829	1.339	-2.952
05	0.568	-3.701	0.737	-2.112
06	-2.37	-3.094	1.343	-3.455
07	1.373	-4.516	-3.701	-4.028
08	-3.094	-4.516	1.369	-4.516
09	-3.455	1.364	-3.701	-3.455
10	-2.446	-2.112	-4.028	1.328
11	-0.495	-2.619	1.183	-2.952
12	-4.028	1.314	-2.829	-1.592
13	1.282	-1.862	-2.004	-2.233
14	-0.736	-1.204	1.109	-1.662
15	-0.518	-0.195	0.347	0.154
16	0.142	0.075	-0.033	-0.22
17	0.035	0.287	-0.212	-0.195
18	-0.388	0.944	-0.998	-0.961

Standard thresholds

P-value	Threshold
0.001	1.01496
0.0005	2.39296
0.0001	5.30001