| Motif | ZN480.H12INVIVO.1.P.C |
| Gene (human) | ZNF480 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | C |
| Motif | ZN480.H12INVIVO.1.P.C |
| Gene (human) | ZNF480 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | C |
| Motif length | 10 |
| Consensus | SMCWWTCYYh |
| GC content | 52.14% |
| Information content (bits; total / per base) | 9.551 / 0.955 |
| Data sources | ChIP-Seq |
| Aligned words | 295 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (4) | 0.86 | 0.865 | 0.82 | 0.822 | 0.836 | 0.841 | 3.432 | 3.448 | 413.12 | 435.959 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | Unclassified {2.3.3.0} (TFClass) |
| TFClass ID | TFClass: 2.3.3.0.134 |
| HGNC | HGNC:23305 |
| MGI | |
| EntrezGene (human) | GeneID:147657 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | ZN480_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q8WV37 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | ZN480.H12INVIVO.1.P.C.pcm |
| PWM | ZN480.H12INVIVO.1.P.C.pwm |
| PFM | ZN480.H12INVIVO.1.P.C.pfm |
| Alignment | ZN480.H12INVIVO.1.P.C.words.tsv |
| Threshold to P-value map | ZN480.H12INVIVO.1.P.C.thr |
| Motif in other formats | |
| JASPAR format | ZN480.H12INVIVO.1.P.C_jaspar_format.txt |
| MEME format | ZN480.H12INVIVO.1.P.C_meme_format.meme |
| Transfac format | ZN480.H12INVIVO.1.P.C_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 27.0 | 188.0 | 54.0 | 26.0 |
| 02 | 87.0 | 152.0 | 3.0 | 53.0 |
| 03 | 0.0 | 293.0 | 0.0 | 2.0 |
| 04 | 189.0 | 29.0 | 25.0 | 52.0 |
| 05 | 108.0 | 48.0 | 6.0 | 133.0 |
| 06 | 0.0 | 0.0 | 0.0 | 295.0 |
| 07 | 0.0 | 290.0 | 2.0 | 3.0 |
| 08 | 25.0 | 199.0 | 4.0 | 67.0 |
| 09 | 7.0 | 151.0 | 3.0 | 134.0 |
| 10 | 60.0 | 75.0 | 16.0 | 144.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.092 | 0.637 | 0.183 | 0.088 |
| 02 | 0.295 | 0.515 | 0.01 | 0.18 |
| 03 | 0.0 | 0.993 | 0.0 | 0.007 |
| 04 | 0.641 | 0.098 | 0.085 | 0.176 |
| 05 | 0.366 | 0.163 | 0.02 | 0.451 |
| 06 | 0.0 | 0.0 | 0.0 | 1.0 |
| 07 | 0.0 | 0.983 | 0.007 | 0.01 |
| 08 | 0.085 | 0.675 | 0.014 | 0.227 |
| 09 | 0.024 | 0.512 | 0.01 | 0.454 |
| 10 | 0.203 | 0.254 | 0.054 | 0.488 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.973 | 0.924 | -0.305 | -1.008 |
| 02 | 0.162 | 0.713 | -2.833 | -0.323 |
| 03 | -3.968 | 1.365 | -3.968 | -3.09 |
| 04 | 0.929 | -0.905 | -1.046 | -0.342 |
| 05 | 0.375 | -0.419 | -2.315 | 0.581 |
| 06 | -3.968 | -3.968 | -3.968 | 1.372 |
| 07 | -3.968 | 1.355 | -3.09 | -2.833 |
| 08 | -1.046 | 0.981 | -2.629 | -0.094 |
| 09 | -2.189 | 0.707 | -2.833 | 0.589 |
| 10 | -0.202 | 0.016 | -1.462 | 0.66 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.10752 |
| 0.0005 | 5.91944 |
| 0.0001 | 7.386355 |