MotifZN480.H12INVIVO.1.P.C
Gene (human)ZNF480
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length10
ConsensusSMCWWTCYYh
GC content52.14%
Information content (bits; total / per base)9.551 / 0.955
Data sourcesChIP-Seq
Aligned words295

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.86 0.865 0.82 0.822 0.836 0.841 3.432 3.448 413.12 435.959
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.134
HGNCHGNC:23305
MGI
EntrezGene (human)GeneID:147657
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN480_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q8WV37
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0127.0188.054.026.0
0287.0152.03.053.0
030.0293.00.02.0
04189.029.025.052.0
05108.048.06.0133.0
060.00.00.0295.0
070.0290.02.03.0
0825.0199.04.067.0
097.0151.03.0134.0
1060.075.016.0144.0
PFM
ACGT
010.0920.6370.1830.088
020.2950.5150.010.18
030.00.9930.00.007
040.6410.0980.0850.176
050.3660.1630.020.451
060.00.00.01.0
070.00.9830.0070.01
080.0850.6750.0140.227
090.0240.5120.010.454
100.2030.2540.0540.488
PWM
ACGT
01-0.9730.924-0.305-1.008
020.1620.713-2.833-0.323
03-3.9681.365-3.968-3.09
040.929-0.905-1.046-0.342
050.375-0.419-2.3150.581
06-3.968-3.968-3.9681.372
07-3.9681.355-3.09-2.833
08-1.0460.981-2.629-0.094
09-2.1890.707-2.8330.589
10-0.2020.016-1.4620.66
Standard thresholds
P-value Threshold
0.001 5.10752
0.0005 5.91944
0.0001 7.386355