MotifZN480.H12INVIVO.0.P.C
Gene (human)ZNF480
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length24
ConsensusdSCdRTChYhvnnvCnCvYTChnh
GC content52.84%
Information content (bits; total / per base)14.033 / 0.585
Data sourcesChIP-Seq
Aligned words331

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.958 0.965 0.949 0.955 0.961 0.967 7.25 7.293 556.952 605.886
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.134
HGNCHGNC:23305
MGI
EntrezGene (human)GeneID:147657
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN480_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q8WV37
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0171.033.0148.079.0
029.0261.038.023.0
0329.0271.09.022.0
04147.048.054.082.0
05178.09.0111.033.0
062.022.021.0286.0
072.0306.09.014.0
0886.0113.040.092.0
0910.0204.030.087.0
1076.0110.039.0106.0
1199.088.0105.039.0
1280.080.0101.070.0
1398.0100.045.088.0
14131.082.066.052.0
1520.0284.02.025.0
16136.048.011.0136.0
178.0288.02.033.0
18178.058.050.045.0
1939.076.019.0197.0
2013.018.08.0292.0
211.0314.04.012.0
2259.0175.016.081.0
2336.0120.036.0139.0
2464.083.043.0141.0
PFM
ACGT
010.2150.10.4470.239
020.0270.7890.1150.069
030.0880.8190.0270.066
040.4440.1450.1630.248
050.5380.0270.3350.1
060.0060.0660.0630.864
070.0060.9240.0270.042
080.260.3410.1210.278
090.030.6160.0910.263
100.230.3320.1180.32
110.2990.2660.3170.118
120.2420.2420.3050.211
130.2960.3020.1360.266
140.3960.2480.1990.157
150.060.8580.0060.076
160.4110.1450.0330.411
170.0240.870.0060.1
180.5380.1750.1510.136
190.1180.230.0570.595
200.0390.0540.0240.882
210.0030.9490.0120.036
220.1780.5290.0480.245
230.1090.3630.1090.42
240.1930.2510.130.426
PWM
ACGT
01-0.15-0.8940.574-0.046
02-2.0871.137-0.758-1.237
03-1.0171.174-2.087-1.278
040.567-0.532-0.418-0.009
050.757-2.0870.289-0.894
06-3.195-1.278-1.3221.228
07-3.1951.295-2.087-1.696
080.0380.307-0.7090.104
09-1.9950.892-0.9850.049
10-0.0840.28-0.7330.244
110.1760.060.234-0.733
12-0.033-0.0330.196-0.164
130.1660.186-0.5950.06
140.453-0.009-0.222-0.454
15-1.3671.221-3.195-1.158
160.49-0.532-1.9110.49
17-2.1871.235-3.195-0.894
180.757-0.348-0.493-0.595
19-0.733-0.084-1.4150.857
20-1.762-1.465-2.1871.249
21-3.5371.321-2.737-1.834
22-0.3310.74-1.574-0.021
23-0.810.366-0.810.512
24-0.2520.003-0.6390.526
Standard thresholds
P-value Threshold
0.001 3.76311
0.0005 4.75256
0.0001 6.83891