ZN479.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN479.H12RSNP.0.P.D
Gene (human)	ZNF479 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	vdGGAdGACYYKRRGGMh
GC content	60.48%
Information content (bits; total / per base)	16.143 / 0.897
Data sources	ChIP-Seq
Aligned words	1001

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.948	0.948	0.908	0.91	0.946	0.947	5.642	5.675	499.301	499.301

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF479-like {2.3.3.57} (TFClass)
TFClass ID	TFClass: 2.3.3.57.1
HGNC	HGNC:23258
MGI
EntrezGene (human)	GeneID:90827 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN479_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96JC4 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN479.H12RSNP.0.P.D.pcm
PWM	ZN479.H12RSNP.0.P.D.pwm
PFM	ZN479.H12RSNP.0.P.D.pfm
Alignment	ZN479.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN479.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN479.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN479.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN479.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN479.H12RSNP.0.P.D_homer_format_0.001.txt ZN479.H12RSNP.0.P.D_homer_format_0.0005.txt ZN479.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	320.0	167.0	351.0	163.0
02	270.0	72.0	525.0	134.0
03	72.0	17.0	812.0	100.0
04	26.0	6.0	958.0	11.0
05	879.0	50.0	69.0	3.0
06	194.0	76.0	176.0	555.0
07	18.0	17.0	962.0	4.0
08	815.0	156.0	30.0	0.0
09	5.0	786.0	18.0	192.0
10	32.0	372.0	20.0	577.0
11	35.0	483.0	83.0	400.0
12	59.0	32.0	481.0	429.0
13	203.0	48.0	714.0	36.0
14	268.0	27.0	591.0	115.0
15	1.0	5.0	989.0	6.0
16	39.0	38.0	891.0	33.0
17	574.0	212.0	200.0	15.0
18	95.0	410.0	54.0	442.0

PFM

	A	C	G	T
01	0.32	0.167	0.351	0.163
02	0.27	0.072	0.524	0.134
03	0.072	0.017	0.811	0.1
04	0.026	0.006	0.957	0.011
05	0.878	0.05	0.069	0.003
06	0.194	0.076	0.176	0.554
07	0.018	0.017	0.961	0.004
08	0.814	0.156	0.03	0.0
09	0.005	0.785	0.018	0.192
10	0.032	0.372	0.02	0.576
11	0.035	0.483	0.083	0.4
12	0.059	0.032	0.481	0.429
13	0.203	0.048	0.713	0.036
14	0.268	0.027	0.59	0.115
15	0.001	0.005	0.988	0.006
16	0.039	0.038	0.89	0.033
17	0.573	0.212	0.2	0.015
18	0.095	0.41	0.054	0.442

PWM

	A	C	G	T
01	0.244	-0.401	0.336	-0.425
02	0.075	-1.229	0.737	-0.619
03	-1.229	-2.599	1.172	-0.907
04	-2.207	-3.485	1.337	-2.986
05	1.251	-1.583	-1.271	-3.976
06	-0.253	-1.176	-0.349	0.793
07	-2.547	-2.599	1.341	-3.784
08	1.176	-0.468	-2.072	-4.983
09	-3.623	1.14	-2.547	-0.263
10	-2.011	0.394	-2.451	0.831
11	-1.926	0.654	-1.09	0.466
12	-1.423	-2.011	0.65	0.536
13	-0.208	-1.623	1.044	-1.899
14	0.068	-2.171	0.855	-0.769
15	-4.526	-3.623	1.369	-3.485
16	-1.822	-1.847	1.265	-1.982
17	0.826	-0.165	-0.222	-2.712
18	-0.957	0.491	-1.509	0.566

Standard thresholds

P-value	Threshold
0.001	2.58576
0.0005	3.78141
0.0001	6.28676