MotifZN479.H12INVITRO.0.P.D
Gene (human)ZNF479
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length18
ConsensusvdGGAdGACYYKRRGGMh
GC content60.48%
Information content (bits; total / per base)16.143 / 0.897
Data sourcesChIP-Seq
Aligned words1001

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (2) 0.948 0.948 0.908 0.91 0.946 0.947 5.642 5.675 499.301 499.301
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF479-like {2.3.3.57} (TFClass)
TFClass IDTFClass: 2.3.3.57.1
HGNCHGNC:23258
MGI
EntrezGene (human)GeneID:90827
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN479_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q96JC4
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01320.0167.0351.0163.0
02270.072.0525.0134.0
0372.017.0812.0100.0
0426.06.0958.011.0
05879.050.069.03.0
06194.076.0176.0555.0
0718.017.0962.04.0
08815.0156.030.00.0
095.0786.018.0192.0
1032.0372.020.0577.0
1135.0483.083.0400.0
1259.032.0481.0429.0
13203.048.0714.036.0
14268.027.0591.0115.0
151.05.0989.06.0
1639.038.0891.033.0
17574.0212.0200.015.0
1895.0410.054.0442.0
PFM
ACGT
010.320.1670.3510.163
020.270.0720.5240.134
030.0720.0170.8110.1
040.0260.0060.9570.011
050.8780.050.0690.003
060.1940.0760.1760.554
070.0180.0170.9610.004
080.8140.1560.030.0
090.0050.7850.0180.192
100.0320.3720.020.576
110.0350.4830.0830.4
120.0590.0320.4810.429
130.2030.0480.7130.036
140.2680.0270.590.115
150.0010.0050.9880.006
160.0390.0380.890.033
170.5730.2120.20.015
180.0950.410.0540.442
PWM
ACGT
010.244-0.4010.336-0.425
020.075-1.2290.737-0.619
03-1.229-2.5991.172-0.907
04-2.207-3.4851.337-2.986
051.251-1.583-1.271-3.976
06-0.253-1.176-0.3490.793
07-2.547-2.5991.341-3.784
081.176-0.468-2.072-4.983
09-3.6231.14-2.547-0.263
10-2.0110.394-2.4510.831
11-1.9260.654-1.090.466
12-1.423-2.0110.650.536
13-0.208-1.6231.044-1.899
140.068-2.1710.855-0.769
15-4.526-3.6231.369-3.485
16-1.822-1.8471.265-1.982
170.826-0.165-0.222-2.712
18-0.9570.491-1.5090.566
Standard thresholds
P-value Threshold
0.001 2.58576
0.0005 3.78141
0.0001 6.28676