ZN467.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN467.H12INVITRO.0.P.D
Gene (human)	ZNF467 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf467
Gene synonyms (mouse)	Ezi, Zfp467
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	vRRRvRRRRRRRRdRRGGGAGGR
GC content	67.5%
Information content (bits; total / per base)	18.23 / 0.793
Data sources	ChIP-Seq
Aligned words	992

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.851	0.871	0.745	0.757	0.898	0.911	4.725	4.839	197.745	257.319

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.45
HGNC	HGNC:23154
MGI	MGI:1916160
EntrezGene (human)	GeneID:168544 (SSTAR profile)
EntrezGene (mouse)	GeneID:68910 (SSTAR profile)
UniProt ID (human)	ZN467_HUMAN
UniProt ID (mouse)	ZN467_MOUSE
UniProt AC (human)	Q7Z7K2 (TFClass)
UniProt AC (mouse)	Q8JZL0 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN467.H12INVITRO.0.P.D.pcm
PWM	ZN467.H12INVITRO.0.P.D.pwm
PFM	ZN467.H12INVITRO.0.P.D.pfm
Alignment	ZN467.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN467.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN467.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN467.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN467.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN467.H12INVITRO.0.P.D_homer_format_0.001.txt ZN467.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN467.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	223.0	100.0	571.0	98.0
02	320.0	66.0	537.0	69.0
03	212.0	55.0	673.0	52.0
04	259.0	84.0	597.0	52.0
05	278.0	99.0	540.0	75.0
06	242.0	72.0	619.0	59.0
07	235.0	57.0	642.0	58.0
08	380.0	54.0	527.0	31.0
09	323.0	49.0	570.0	50.0
10	306.0	68.0	570.0	48.0
11	342.0	75.0	508.0	67.0
12	185.0	75.0	708.0	24.0
13	200.0	91.0	665.0	36.0
14	527.0	104.0	196.0	165.0
15	149.0	39.0	727.0	77.0
16	287.0	10.0	685.0	10.0
17	131.0	9.0	832.0	20.0
18	78.0	44.0	861.0	9.0
19	167.0	50.0	771.0	4.0
20	962.0	11.0	0.0	19.0
21	14.0	5.0	962.0	11.0
22	123.0	15.0	844.0	10.0
23	385.0	47.0	517.0	43.0

PFM

	A	C	G	T
01	0.225	0.101	0.576	0.099
02	0.323	0.067	0.541	0.07
03	0.214	0.055	0.678	0.052
04	0.261	0.085	0.602	0.052
05	0.28	0.1	0.544	0.076
06	0.244	0.073	0.624	0.059
07	0.237	0.057	0.647	0.058
08	0.383	0.054	0.531	0.031
09	0.326	0.049	0.575	0.05
10	0.308	0.069	0.575	0.048
11	0.345	0.076	0.512	0.068
12	0.186	0.076	0.714	0.024
13	0.202	0.092	0.67	0.036
14	0.531	0.105	0.198	0.166
15	0.15	0.039	0.733	0.078
16	0.289	0.01	0.691	0.01
17	0.132	0.009	0.839	0.02
18	0.079	0.044	0.868	0.009
19	0.168	0.05	0.777	0.004
20	0.97	0.011	0.0	0.019
21	0.014	0.005	0.97	0.011
22	0.124	0.015	0.851	0.01
23	0.388	0.047	0.521	0.043

PWM

	A	C	G	T
01	-0.105	-0.898	0.83	-0.918
02	0.253	-1.305	0.769	-1.262
03	-0.156	-1.482	0.994	-1.536
04	0.043	-1.069	0.874	-1.536
05	0.113	-0.908	0.774	-1.18
06	-0.024	-1.22	0.911	-1.414
07	-0.053	-1.447	0.947	-1.431
08	0.424	-1.5	0.75	-2.032
09	0.263	-1.594	0.828	-1.574
10	0.209	-1.276	0.828	-1.614
11	0.319	-1.18	0.714	-1.29
12	-0.291	-1.18	1.045	-2.273
13	-0.213	-0.991	0.982	-1.89
14	0.75	-0.86	-0.233	-0.404
15	-0.505	-1.814	1.071	-1.154
16	0.145	-3.059	1.012	-3.059
17	-0.632	-3.148	1.206	-2.442
18	-1.142	-1.698	1.24	-3.148
19	-0.392	-1.574	1.13	-3.776
20	1.35	-2.977	-4.975	-2.489
21	-2.765	-3.615	1.35	-2.977
22	-0.694	-2.703	1.22	-3.059
23	0.437	-1.634	0.731	-1.72

Standard thresholds

P-value	Threshold
0.001	2.00251
0.0005	3.21801
0.0001	5.78731