MotifZN449.H12INVIVO.1.S.C
Gene (human)ZNF449
(GeneCards)
Gene synonyms (human)ZSCAN19
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length15
ConsensusdddRGKWGGKMGbKn
GC content64.97%
Information content (bits; total / per base)10.222 / 0.681
Data sourcesHT-SELEX
Aligned words6585

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (12) 0.658 0.684 0.454 0.481 0.694 0.737 1.946 2.189 65.204 93.0

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 0.714 0.654 0.66 0.617 0.609 0.585
best 0.714 0.654 0.66 0.617 0.609 0.585

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 2.844 0.939 0.067 0.04
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.41
HGNCHGNC:21039
MGI
EntrezGene (human)GeneID:203523
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN449_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q6P9G9
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
011335.751040.752859.751348.75
022090.75616.752636.751240.75
032306.0568.02066.01645.0
04693.0579.04735.0578.0
05199.0705.05288.0393.0
06768.024.02756.03037.0
072002.01.0145.04437.0
080.01.06584.00.0
092.0950.05582.051.0
10466.040.03959.02120.0
111044.04286.0888.0367.0
121067.00.05212.0306.0
13659.02205.01844.01877.0
14673.25405.254593.25913.25
151614.51104.52500.51365.5
PFM
ACGT
010.2030.1580.4340.205
020.3180.0940.40.188
030.350.0860.3140.25
040.1050.0880.7190.088
050.030.1070.8030.06
060.1170.0040.4190.461
070.3040.00.0220.674
080.00.01.00.0
090.00.1440.8480.008
100.0710.0060.6010.322
110.1590.6510.1350.056
120.1620.00.7910.046
130.10.3350.280.285
140.1020.0620.6980.139
150.2450.1680.380.207
PWM
ACGT
01-0.209-0.4580.552-0.199
020.239-0.980.471-0.282
030.337-1.0620.227-0.001
04-0.863-1.0421.056-1.044
05-2.103-0.8461.166-1.428
06-0.761-4.1420.5150.612
070.195-6.245-2.4160.991
08-6.62-6.2451.385-6.62
09-5.973-0.5491.22-3.434
10-1.259-3.6650.8770.253
11-0.4550.956-0.616-1.496
12-0.433-6.621.152-1.677
13-0.9140.2920.1130.131
14-0.892-1.3981.025-0.588
15-0.019-0.3980.418-0.187
Standard thresholds
P-value Threshold
0.001 4.77031
0.0005 5.61881
0.0001 7.29366