MotifZN449.H12INVITRO.0.P.B
Gene (human)ZNF449
(GeneCards)
Gene synonyms (human)ZSCAN19
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length10
ConsensusKGTTGGGCKb
GC content68.09%
Information content (bits; total / per base)13.473 / 1.347
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (12) 0.905 0.944 0.847 0.89 0.898 0.942 3.864 4.13 404.696 478.824

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 0.749 0.724 0.622 0.626 0.553 0.571
best 0.749 0.724 0.622 0.626 0.553 0.571

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 9.669 3.272 0.223 0.157
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.41
HGNCHGNC:21039
MGI
EntrezGene (human)GeneID:203523
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN449_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q6P9G9
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
0197.022.0764.0117.0
024.015.0958.023.0
035.0260.05.0730.0
0452.016.022.0910.0
051.01.0996.02.0
060.02.0991.07.0
079.088.0891.012.0
080.0996.02.02.0
0990.012.0187.0711.0
1022.0300.0281.0397.0
PFM
ACGT
010.0970.0220.7640.117
020.0040.0150.9580.023
030.0050.260.0050.73
040.0520.0160.0220.91
050.0010.0010.9960.002
060.00.0020.9910.007
070.0090.0880.8910.012
080.00.9960.0020.002
090.090.0120.1870.711
100.0220.30.2810.397
PWM
ACGT
01-0.936-2.3621.112-0.752
02-3.783-2.7111.338-2.32
03-3.6220.039-3.6221.067
04-1.544-2.653-2.3621.287
05-4.525-4.5251.377-4.213
06-4.982-4.2131.372-3.362
07-3.156-1.0321.266-2.909
08-4.9821.377-4.213-4.213
09-1.01-2.909-0.2881.041
10-2.3620.1810.1160.46
Standard thresholds
P-value Threshold
0.001 3.27306
0.0005 4.50741
0.0001 7.007865