ZN444.H12INVITRO.0.S.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN444.H12INVITRO.0.S.C
Gene (human)	ZNF444 (GeneCards)
Gene synonyms (human)	EZF2, ZSCAN17
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	18
Consensus	nhvhCCCCCTCCCCChhn
GC content	73.93%
Information content (bits; total / per base)	20.656 / 1.148
Data sources	HT-SELEX
Aligned words	6872

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 1 experiments	median	0.962	0.962	0.703	0.751	0.577	0.635
Non-Methyl HT-SELEX, 1 experiments	best	0.962	0.962	0.703	0.751	0.577	0.635

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.24
HGNC	HGNC:16052
MGI
EntrezGene (human)	GeneID:55311 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN444_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N0Y2 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	0

PCM	ZN444.H12INVITRO.0.S.C.pcm
PWM	ZN444.H12INVITRO.0.S.C.pwm
PFM	ZN444.H12INVITRO.0.S.C.pfm
Alignment	ZN444.H12INVITRO.0.S.C.words.tsv
Threshold to P-value map	ZN444.H12INVITRO.0.S.C.thr
Motif in other formats
JASPAR format	ZN444.H12INVITRO.0.S.C_jaspar_format.txt
MEME format	ZN444.H12INVITRO.0.S.C_meme_format.meme
Transfac format	ZN444.H12INVITRO.0.S.C_transfac_format.txt
Homer format	ZN444.H12INVITRO.0.S.C_homer_format_0.001.txt ZN444.H12INVITRO.0.S.C_homer_format_0.0005.txt ZN444.H12INVITRO.0.S.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1320.5	2744.5	1333.5	1473.5
02	1051.0	3729.0	895.0	1197.0
03	1984.0	1394.0	2913.0	581.0
04	1491.0	1357.0	390.0	3634.0
05	192.0	6276.0	148.0	256.0
06	121.0	6504.0	75.0	172.0
07	103.0	6698.0	14.0	57.0
08	13.0	6806.0	21.0	32.0
09	49.0	6790.0	3.0	30.0
10	11.0	13.0	1.0	6847.0
11	14.0	6838.0	3.0	17.0
12	67.0	6746.0	31.0	28.0
13	65.0	6706.0	13.0	88.0
14	112.0	6112.0	53.0	595.0
15	102.0	6573.0	44.0	153.0
16	1464.0	3019.0	468.0	1921.0
17	1027.5	2610.5	610.5	2623.5
18	1464.25	2265.25	1256.25	1886.25

PFM

	A	C	G	T
01	0.192	0.399	0.194	0.214
02	0.153	0.543	0.13	0.174
03	0.289	0.203	0.424	0.085
04	0.217	0.197	0.057	0.529
05	0.028	0.913	0.022	0.037
06	0.018	0.946	0.011	0.025
07	0.015	0.975	0.002	0.008
08	0.002	0.99	0.003	0.005
09	0.007	0.988	0.0	0.004
10	0.002	0.002	0.0	0.996
11	0.002	0.995	0.0	0.002
12	0.01	0.982	0.005	0.004
13	0.009	0.976	0.002	0.013
14	0.016	0.889	0.008	0.087
15	0.015	0.956	0.006	0.022
16	0.213	0.439	0.068	0.28
17	0.15	0.38	0.089	0.382
18	0.213	0.33	0.183	0.274

PWM

	A	C	G	T
01	-0.263	0.468	-0.253	-0.153
02	-0.491	0.774	-0.651	-0.361
03	0.144	-0.209	0.527	-1.082
04	-0.142	-0.236	-1.478	0.748
05	-2.181	1.295	-2.438	-1.896
06	-2.636	1.33	-3.104	-2.29
07	-2.794	1.36	-4.665	-3.369
08	-4.728	1.376	-4.306	-3.918
09	-3.514	1.373	-5.8	-3.978
10	-4.869	-4.728	-6.284	1.382
11	-4.665	1.38	-5.8	-4.495
12	-3.213	1.367	-3.947	-4.042
13	-3.242	1.361	-4.728	-2.948
14	-2.712	1.268	-3.439	-1.058
15	-2.804	1.341	-3.617	-2.405
16	-0.16	0.563	-1.297	0.112
17	-0.513	0.418	-1.032	0.423
18	-0.16	0.276	-0.313	0.093

Standard thresholds

P-value	Threshold
0.001	-1.69789
0.0005	-0.01474
0.0001	3.49466