MotifZN441.H12INVIVO.1.P.C
Gene (human)ZNF441
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length31
ConsensusTTGAGACGGAGTCTYGCTCTGTCSCCCAGGC
GC content61.74%
Information content (bits; total / per base)45.91 / 1.481
Data sourcesChIP-Seq
Aligned words722

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.862 0.885 0.809 0.837 0.906 0.918 18.408 19.586 316.991 339.444
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.221
HGNCHGNC:20875
MGI
EntrezGene (human)GeneID:126068
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN441_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q8N8Z8
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
017.030.020.0665.0
0213.021.037.0651.0
0316.010.0684.012.0
04693.05.019.05.0
0517.02.0696.07.0
06673.05.038.06.0
072.0699.01.020.0
084.02.0712.04.0
091.02.0718.01.0
10713.02.06.01.0
1111.03.0691.017.0
124.017.03.0698.0
135.0612.07.098.0
144.011.09.0698.0
1517.0505.031.0169.0
1673.026.0602.021.0
174.0671.011.036.0
1822.021.010.0669.0
197.0650.033.032.0
2012.016.022.0672.0
2122.020.0624.056.0
223.013.059.0647.0
233.0647.03.069.0
2454.080.0520.068.0
253.0659.052.08.0
266.0699.07.010.0
2718.0658.016.030.0
28603.056.051.012.0
2966.015.0629.012.0
3021.027.0662.012.0
3117.0598.064.043.0
PFM
ACGT
010.010.0420.0280.921
020.0180.0290.0510.902
030.0220.0140.9470.017
040.960.0070.0260.007
050.0240.0030.9640.01
060.9320.0070.0530.008
070.0030.9680.0010.028
080.0060.0030.9860.006
090.0010.0030.9940.001
100.9880.0030.0080.001
110.0150.0040.9570.024
120.0060.0240.0040.967
130.0070.8480.010.136
140.0060.0150.0120.967
150.0240.6990.0430.234
160.1010.0360.8340.029
170.0060.9290.0150.05
180.030.0290.0140.927
190.010.90.0460.044
200.0170.0220.030.931
210.030.0280.8640.078
220.0040.0180.0820.896
230.0040.8960.0040.096
240.0750.1110.720.094
250.0040.9130.0720.011
260.0080.9680.010.014
270.0250.9110.0220.042
280.8350.0780.0710.017
290.0910.0210.8710.017
300.0290.0370.9170.017
310.0240.8280.0890.06
PWM
ACGT
01-3.048-1.75-2.131.297
02-2.521-2.085-1.551.276
03-2.334-2.751.326-2.591
041.339-3.311-2.177-3.311
05-2.279-3.9111.343-3.048
061.309-3.311-1.525-3.171
07-3.9111.347-4.232-2.13
08-3.474-3.9111.366-3.474
09-4.232-3.9111.374-4.232
101.367-3.911-3.171-4.232
11-2.668-3.6691.336-2.279
12-3.474-2.279-3.6691.346
13-3.3111.215-3.048-0.603
14-3.474-2.668-2.841.346
15-2.2791.023-1.719-0.065
16-0.892-1.8851.198-2.085
17-3.4741.306-2.668-1.577
18-2.042-2.085-2.751.303
19-3.0481.275-1.66-1.689
20-2.591-2.334-2.0421.308
21-2.042-2.131.234-1.15
22-3.669-2.521-1.11.27
23-3.6691.27-3.669-0.947
24-1.186-0.8021.052-0.961
25-3.6691.288-1.222-2.938
26-3.1711.347-3.048-2.75
27-2.2271.287-2.334-1.75
281.2-1.15-1.241-2.591
29-0.991-2.3931.242-2.591
30-2.085-1.851.293-2.591
31-2.2791.192-1.021-1.406
Standard thresholds
P-value Threshold
0.001 -16.00474
0.0005 -13.87744
0.0001 -9.28039