ZN441.H12INVIVO.1.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN441.H12INVIVO.1.P.C
Gene (human)	ZNF441 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	31
Consensus	TTGAGACGGAGTCTYGCTCTGTCSCCCAGGC
GC content	61.74%
Information content (bits; total / per base)	45.91 / 1.481
Data sources	ChIP-Seq
Aligned words	722

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.862	0.885	0.809	0.837	0.906	0.918	18.408	19.586	316.991	339.444

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.221
HGNC	HGNC:20875
MGI
EntrezGene (human)	GeneID:126068 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN441_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N8Z8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN441.H12INVIVO.1.P.C.pcm
PWM	ZN441.H12INVIVO.1.P.C.pwm
PFM	ZN441.H12INVIVO.1.P.C.pfm
Alignment	ZN441.H12INVIVO.1.P.C.words.tsv
Threshold to P-value map	ZN441.H12INVIVO.1.P.C.thr
Motif in other formats
JASPAR format	ZN441.H12INVIVO.1.P.C_jaspar_format.txt
MEME format	ZN441.H12INVIVO.1.P.C_meme_format.meme
Transfac format	ZN441.H12INVIVO.1.P.C_transfac_format.txt
Homer format	ZN441.H12INVIVO.1.P.C_homer_format_0.001.txt ZN441.H12INVIVO.1.P.C_homer_format_0.0005.txt ZN441.H12INVIVO.1.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	7.0	30.0	20.0	665.0
02	13.0	21.0	37.0	651.0
03	16.0	10.0	684.0	12.0
04	693.0	5.0	19.0	5.0
05	17.0	2.0	696.0	7.0
06	673.0	5.0	38.0	6.0
07	2.0	699.0	1.0	20.0
08	4.0	2.0	712.0	4.0
09	1.0	2.0	718.0	1.0
10	713.0	2.0	6.0	1.0
11	11.0	3.0	691.0	17.0
12	4.0	17.0	3.0	698.0
13	5.0	612.0	7.0	98.0
14	4.0	11.0	9.0	698.0
15	17.0	505.0	31.0	169.0
16	73.0	26.0	602.0	21.0
17	4.0	671.0	11.0	36.0
18	22.0	21.0	10.0	669.0
19	7.0	650.0	33.0	32.0
20	12.0	16.0	22.0	672.0
21	22.0	20.0	624.0	56.0
22	3.0	13.0	59.0	647.0
23	3.0	647.0	3.0	69.0
24	54.0	80.0	520.0	68.0
25	3.0	659.0	52.0	8.0
26	6.0	699.0	7.0	10.0
27	18.0	658.0	16.0	30.0
28	603.0	56.0	51.0	12.0
29	66.0	15.0	629.0	12.0
30	21.0	27.0	662.0	12.0
31	17.0	598.0	64.0	43.0

PFM

	A	C	G	T
01	0.01	0.042	0.028	0.921
02	0.018	0.029	0.051	0.902
03	0.022	0.014	0.947	0.017
04	0.96	0.007	0.026	0.007
05	0.024	0.003	0.964	0.01
06	0.932	0.007	0.053	0.008
07	0.003	0.968	0.001	0.028
08	0.006	0.003	0.986	0.006
09	0.001	0.003	0.994	0.001
10	0.988	0.003	0.008	0.001
11	0.015	0.004	0.957	0.024
12	0.006	0.024	0.004	0.967
13	0.007	0.848	0.01	0.136
14	0.006	0.015	0.012	0.967
15	0.024	0.699	0.043	0.234
16	0.101	0.036	0.834	0.029
17	0.006	0.929	0.015	0.05
18	0.03	0.029	0.014	0.927
19	0.01	0.9	0.046	0.044
20	0.017	0.022	0.03	0.931
21	0.03	0.028	0.864	0.078
22	0.004	0.018	0.082	0.896
23	0.004	0.896	0.004	0.096
24	0.075	0.111	0.72	0.094
25	0.004	0.913	0.072	0.011
26	0.008	0.968	0.01	0.014
27	0.025	0.911	0.022	0.042
28	0.835	0.078	0.071	0.017
29	0.091	0.021	0.871	0.017
30	0.029	0.037	0.917	0.017
31	0.024	0.828	0.089	0.06

PWM

	A	C	G	T
01	-3.048	-1.75	-2.13	1.297
02	-2.521	-2.085	-1.55	1.276
03	-2.334	-2.75	1.326	-2.591
04	1.339	-3.311	-2.177	-3.311
05	-2.279	-3.911	1.343	-3.048
06	1.309	-3.311	-1.525	-3.171
07	-3.911	1.347	-4.232	-2.13
08	-3.474	-3.911	1.366	-3.474
09	-4.232	-3.911	1.374	-4.232
10	1.367	-3.911	-3.171	-4.232
11	-2.668	-3.669	1.336	-2.279
12	-3.474	-2.279	-3.669	1.346
13	-3.311	1.215	-3.048	-0.603
14	-3.474	-2.668	-2.84	1.346
15	-2.279	1.023	-1.719	-0.065
16	-0.892	-1.885	1.198	-2.085
17	-3.474	1.306	-2.668	-1.577
18	-2.042	-2.085	-2.75	1.303
19	-3.048	1.275	-1.66	-1.689
20	-2.591	-2.334	-2.042	1.308
21	-2.042	-2.13	1.234	-1.15
22	-3.669	-2.521	-1.1	1.27
23	-3.669	1.27	-3.669	-0.947
24	-1.186	-0.802	1.052	-0.961
25	-3.669	1.288	-1.222	-2.938
26	-3.171	1.347	-3.048	-2.75
27	-2.227	1.287	-2.334	-1.75
28	1.2	-1.15	-1.241	-2.591
29	-0.991	-2.393	1.242	-2.591
30	-2.085	-1.85	1.293	-2.591
31	-2.279	1.192	-1.021	-1.406

Standard thresholds

P-value	Threshold
0.001	-16.00474
0.0005	-13.87744
0.0001	-9.28039