ZN441.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN441.H12INVIVO.0.P.C
Gene (human)	ZNF441 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	10
Consensus	RSSCGGAKYb
GC content	67.79%
Information content (bits; total / per base)	10.737 / 1.074
Data sources	ChIP-Seq
Aligned words	281

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.919	0.93	0.788	0.817	0.928	0.93	3.245	3.261	280.92	297.921

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.221
HGNC	HGNC:20875
MGI
EntrezGene (human)	GeneID:126068 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN441_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N8Z8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN441.H12INVIVO.0.P.C.pcm
PWM	ZN441.H12INVIVO.0.P.C.pwm
PFM	ZN441.H12INVIVO.0.P.C.pfm
Alignment	ZN441.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN441.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN441.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN441.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN441.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN441.H12INVIVO.0.P.C_homer_format_0.001.txt ZN441.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN441.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	73.0	24.0	170.0	14.0
02	52.0	54.0	163.0	12.0
03	37.0	44.0	182.0	18.0
04	4.0	259.0	1.0	17.0
05	1.0	0.0	278.0	2.0
06	0.0	0.0	281.0	0.0
07	276.0	1.0	2.0	2.0
08	18.0	0.0	185.0	78.0
09	8.0	104.0	3.0	166.0
10	19.0	118.0	36.0	108.0

PFM

	A	C	G	T
01	0.26	0.085	0.605	0.05
02	0.185	0.192	0.58	0.043
03	0.132	0.157	0.648	0.064
04	0.014	0.922	0.004	0.06
05	0.004	0.0	0.989	0.007
06	0.0	0.0	1.0	0.0
07	0.982	0.004	0.007	0.007
08	0.064	0.0	0.658	0.278
09	0.028	0.37	0.011	0.591
10	0.068	0.42	0.128	0.384

PWM

	A	C	G	T
01	0.038	-1.037	0.872	-1.537
02	-0.294	-0.257	0.83	-1.676
03	-0.624	-0.456	0.94	-1.306
04	-2.584	1.29	-3.392	-1.359
05	-3.392	-3.929	1.361	-3.045
06	-3.929	-3.929	1.371	-3.929
07	1.354	-3.392	-3.045	-3.045
08	-1.306	-3.929	0.956	0.103
09	-2.03	0.386	-2.788	0.849
10	-1.256	0.511	-0.65	0.423

Standard thresholds

P-value	Threshold
0.001	4.654235
0.0005	5.634095
0.0001	7.50625