ZN440.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN440.H12INVITRO.0.P.D
Gene (human)	ZNF440 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	ddRvhhdRRGCAGAAChAYYddW
GC content	44.41%
Information content (bits; total / per base)	17.184 / 0.747
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.912	0.92	0.884	0.897	0.918	0.924	8.3	8.401	303.799	327.119

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.9
HGNC	HGNC:20874
MGI
EntrezGene (human)	GeneID:126070 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN440_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8IYI8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN440.H12INVITRO.0.P.D.pcm
PWM	ZN440.H12INVITRO.0.P.D.pwm
PFM	ZN440.H12INVITRO.0.P.D.pfm
Alignment	ZN440.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN440.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN440.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN440.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN440.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN440.H12INVITRO.0.P.D_homer_format_0.001.txt ZN440.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN440.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	495.0	128.0	223.0	154.0
02	318.0	94.0	434.0	154.0
03	199.0	64.0	612.0	125.0
04	230.0	222.0	393.0	155.0
05	190.0	504.0	108.0	198.0
06	554.0	111.0	85.0	250.0
07	473.0	71.0	335.0	121.0
08	622.0	93.0	148.0	137.0
09	701.0	28.0	139.0	132.0
10	113.0	6.0	860.0	21.0
11	9.0	910.0	9.0	72.0
12	871.0	2.0	27.0	100.0
13	34.0	62.0	873.0	31.0
14	802.0	18.0	179.0	1.0
15	908.0	15.0	75.0	2.0
16	4.0	949.0	5.0	42.0
17	379.0	381.0	68.0	172.0
18	916.0	29.0	38.0	17.0
19	88.0	660.0	31.0	221.0
20	58.0	183.0	62.0	697.0
21	160.0	109.0	566.0	165.0
22	522.0	96.0	102.0	280.0
23	236.0	54.0	54.0	656.0

PFM

	A	C	G	T
01	0.495	0.128	0.223	0.154
02	0.318	0.094	0.434	0.154
03	0.199	0.064	0.612	0.125
04	0.23	0.222	0.393	0.155
05	0.19	0.504	0.108	0.198
06	0.554	0.111	0.085	0.25
07	0.473	0.071	0.335	0.121
08	0.622	0.093	0.148	0.137
09	0.701	0.028	0.139	0.132
10	0.113	0.006	0.86	0.021
11	0.009	0.91	0.009	0.072
12	0.871	0.002	0.027	0.1
13	0.034	0.062	0.873	0.031
14	0.802	0.018	0.179	0.001
15	0.908	0.015	0.075	0.002
16	0.004	0.949	0.005	0.042
17	0.379	0.381	0.068	0.172
18	0.916	0.029	0.038	0.017
19	0.088	0.66	0.031	0.221
20	0.058	0.183	0.062	0.697
21	0.16	0.109	0.566	0.165
22	0.522	0.096	0.102	0.28
23	0.236	0.054	0.054	0.656

PWM

	A	C	G	T
01	0.68	-0.663	-0.113	-0.48
02	0.239	-0.967	0.549	-0.48
03	-0.226	-1.343	0.891	-0.686
04	-0.083	-0.118	0.45	-0.474
05	-0.272	0.698	-0.83	-0.231
06	0.792	-0.803	-1.066	0.0
07	0.634	-1.242	0.291	-0.718
08	0.907	-0.977	-0.52	-0.596
09	1.027	-2.136	-0.582	-0.633
10	-0.786	-3.484	1.231	-2.405
11	-3.156	1.287	-3.156	-1.228
12	1.243	-4.213	-2.171	-0.906
13	-1.952	-1.374	1.246	-2.04
14	1.161	-2.546	-0.331	-4.525
15	1.285	-2.711	-1.188	-4.213
16	-3.783	1.329	-3.622	-1.75
17	0.414	0.419	-1.284	-0.371
18	1.294	-2.103	-1.846	-2.598
19	-1.032	0.967	-2.04	-0.122
20	-1.439	-0.309	-1.374	1.021
21	-0.442	-0.821	0.813	-0.412
22	0.733	-0.946	-0.887	0.113
23	-0.057	-1.508	-1.508	0.96

Standard thresholds

P-value	Threshold
0.001	2.46001
0.0005	3.62546
0.0001	6.08716