ZN436.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN436.H12INVITRO.0.P.D
Gene (human)	ZNF436 (GeneCards)
Gene synonyms (human)	KIAA1710
Gene (mouse)	Znf436
Gene synonyms (mouse)	Kiaa1710, Mlz-4, Zfp46
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	GGARGRCTTCCTGGAGGAGGhGd
GC content	63.53%
Information content (bits; total / per base)	30.74 / 1.337
Data sources	ChIP-Seq
Aligned words	976

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.96	0.979	0.965	0.98	0.959	0.981	13.819	14.18	703.854	925.319

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF180-like {2.3.3.58} (TFClass)
TFClass ID	TFClass: 2.3.3.58.3
HGNC	HGNC:20814
MGI	MGI:99192
EntrezGene (human)	GeneID:80818 (SSTAR profile)
EntrezGene (mouse)	GeneID:22704 (SSTAR profile)
UniProt ID (human)	ZN436_HUMAN
UniProt ID (mouse)	ZN436_MOUSE
UniProt AC (human)	Q9C0F3 (TFClass)
UniProt AC (mouse)	Q8BPP0 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN436.H12INVITRO.0.P.D.pcm
PWM	ZN436.H12INVITRO.0.P.D.pwm
PFM	ZN436.H12INVITRO.0.P.D.pfm
Alignment	ZN436.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN436.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN436.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN436.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN436.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN436.H12INVITRO.0.P.D_homer_format_0.001.txt ZN436.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN436.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	99.0	16.0	840.0	21.0
02	32.0	2.0	939.0	3.0
03	815.0	55.0	66.0	40.0
04	489.0	13.0	454.0	20.0
05	37.0	4.0	924.0	11.0
06	159.0	63.0	733.0	21.0
07	1.0	975.0	0.0	0.0
08	18.0	33.0	7.0	918.0
09	10.0	56.0	83.0	827.0
10	0.0	954.0	4.0	18.0
11	58.0	827.0	8.0	83.0
12	35.0	99.0	15.0	827.0
13	48.0	1.0	896.0	31.0
14	38.0	12.0	910.0	16.0
15	918.0	8.0	24.0	26.0
16	115.0	1.0	858.0	2.0
17	8.0	2.0	963.0	3.0
18	886.0	29.0	14.0	47.0
19	134.0	3.0	839.0	0.0
20	20.0	6.0	937.0	13.0
21	155.0	184.0	86.0	551.0
22	165.0	24.0	774.0	13.0
23	363.0	56.0	465.0	92.0

PFM

	A	C	G	T
01	0.101	0.016	0.861	0.022
02	0.033	0.002	0.962	0.003
03	0.835	0.056	0.068	0.041
04	0.501	0.013	0.465	0.02
05	0.038	0.004	0.947	0.011
06	0.163	0.065	0.751	0.022
07	0.001	0.999	0.0	0.0
08	0.018	0.034	0.007	0.941
09	0.01	0.057	0.085	0.847
10	0.0	0.977	0.004	0.018
11	0.059	0.847	0.008	0.085
12	0.036	0.101	0.015	0.847
13	0.049	0.001	0.918	0.032
14	0.039	0.012	0.932	0.016
15	0.941	0.008	0.025	0.027
16	0.118	0.001	0.879	0.002
17	0.008	0.002	0.987	0.003
18	0.908	0.03	0.014	0.048
19	0.137	0.003	0.86	0.0
20	0.02	0.006	0.96	0.013
21	0.159	0.189	0.088	0.565
22	0.169	0.025	0.793	0.013
23	0.372	0.057	0.476	0.094

PWM

	A	C	G	T
01	-0.892	-2.629	1.231	-2.381
02	-1.986	-4.19	1.342	-3.952
03	1.201	-1.466	-1.289	-1.773
04	0.692	-2.815	0.618	-2.426
05	-1.848	-3.76	1.326	-2.961
06	-0.425	-1.334	1.095	-2.381
07	-4.503	1.38	-4.961	-4.961
08	-2.523	-1.957	-3.338	1.32
09	-3.043	-1.449	-1.065	1.216
10	-4.961	1.358	-3.76	-2.523
11	-1.415	1.216	-3.23	-1.065
12	-1.901	-0.892	-2.688	1.216
13	-1.598	-4.503	1.296	-2.016
14	-1.822	-2.885	1.311	-2.629
15	1.32	-3.23	-2.257	-2.182
16	-0.744	-4.503	1.252	-4.19
17	-3.23	-4.19	1.368	-3.952
18	1.284	-2.079	-2.749	-1.618
19	-0.594	-3.952	1.23	-4.961
20	-2.426	-3.46	1.34	-2.815
21	-0.45	-0.28	-1.03	0.811
22	-0.388	-2.257	1.15	-2.815
23	0.395	-1.449	0.642	-0.964

Standard thresholds

P-value	Threshold
0.001	-6.40139
0.0005	-4.58279
0.0001	-0.68969