ZN433.H12RSNP.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN433.H12RSNP.1.P.D
Gene (human)	ZNF433 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	31
Consensus	TWdYWvRRKWAYYASWGYRGTCvTKWKRWKR
GC content	45.01%
Information content (bits; total / per base)	26.327 / 0.849
Data sources	ChIP-Seq
Aligned words	458

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.925	0.929	0.905	0.91	0.9	0.904	8.635	8.728	336.623	342.328

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.224
HGNC	HGNC:20811
MGI
EntrezGene (human)	GeneID:163059 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN433_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N7K0 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN433.H12RSNP.1.P.D.pcm
PWM	ZN433.H12RSNP.1.P.D.pwm
PFM	ZN433.H12RSNP.1.P.D.pfm
Alignment	ZN433.H12RSNP.1.P.D.words.tsv
Threshold to P-value map	ZN433.H12RSNP.1.P.D.thr
Motif in other formats
JASPAR format	ZN433.H12RSNP.1.P.D_jaspar_format.txt
MEME format	ZN433.H12RSNP.1.P.D_meme_format.meme
Transfac format	ZN433.H12RSNP.1.P.D_transfac_format.txt
Homer format	ZN433.H12RSNP.1.P.D_homer_format_0.001.txt ZN433.H12RSNP.1.P.D_homer_format_0.0005.txt ZN433.H12RSNP.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	23.0	33.0	29.0	373.0
02	153.0	21.0	42.0	242.0
03	168.0	41.0	202.0	47.0
04	23.0	288.0	21.0	126.0
05	152.0	30.0	31.0	245.0
06	43.0	148.0	237.0	30.0
07	193.0	2.0	255.0	8.0
08	260.0	1.0	194.0	3.0
09	17.0	2.0	195.0	244.0
10	201.0	14.0	15.0	228.0
11	445.0	3.0	8.0	2.0
12	3.0	288.0	3.0	164.0
13	5.0	195.0	0.0	258.0
14	381.0	9.0	58.0	10.0
15	32.0	239.0	160.0	27.0
16	151.0	16.0	10.0	281.0
17	37.0	13.0	386.0	22.0
18	16.0	185.0	6.0	251.0
19	186.0	0.0	260.0	12.0
20	20.0	1.0	436.0	1.0
21	0.0	2.0	0.0	456.0
22	3.0	404.0	3.0	48.0
23	186.0	164.0	59.0	49.0
24	20.0	44.0	8.0	386.0
25	18.0	42.0	135.0	263.0
26	152.0	15.0	27.0	264.0
27	30.0	23.0	351.0	54.0
28	62.0	22.0	332.0	42.0
29	243.0	27.0	33.0	155.0
30	39.0	26.0	349.0	44.0
31	180.0	28.0	219.0	31.0

PFM

	A	C	G	T
01	0.05	0.072	0.063	0.814
02	0.334	0.046	0.092	0.528
03	0.367	0.09	0.441	0.103
04	0.05	0.629	0.046	0.275
05	0.332	0.066	0.068	0.535
06	0.094	0.323	0.517	0.066
07	0.421	0.004	0.557	0.017
08	0.568	0.002	0.424	0.007
09	0.037	0.004	0.426	0.533
10	0.439	0.031	0.033	0.498
11	0.972	0.007	0.017	0.004
12	0.007	0.629	0.007	0.358
13	0.011	0.426	0.0	0.563
14	0.832	0.02	0.127	0.022
15	0.07	0.522	0.349	0.059
16	0.33	0.035	0.022	0.614
17	0.081	0.028	0.843	0.048
18	0.035	0.404	0.013	0.548
19	0.406	0.0	0.568	0.026
20	0.044	0.002	0.952	0.002
21	0.0	0.004	0.0	0.996
22	0.007	0.882	0.007	0.105
23	0.406	0.358	0.129	0.107
24	0.044	0.096	0.017	0.843
25	0.039	0.092	0.295	0.574
26	0.332	0.033	0.059	0.576
27	0.066	0.05	0.766	0.118
28	0.135	0.048	0.725	0.092
29	0.531	0.059	0.072	0.338
30	0.085	0.057	0.762	0.096
31	0.393	0.061	0.478	0.068

PWM

	A	C	G	T
01	-1.554	-1.212	-1.335	1.172
02	0.287	-1.639	-0.98	0.741
03	0.379	-1.004	0.562	-0.872
04	-1.554	0.914	-1.639	0.095
05	0.28	-1.303	-1.272	0.754
06	-0.958	0.254	0.721	-1.303
07	0.517	-3.492	0.793	-2.499
08	0.813	-3.825	0.522	-3.243
09	-1.834	-3.492	0.527	0.75
10	0.557	-2.011	-1.949	0.682
11	1.348	-3.243	-2.499	-3.492
12	-3.243	0.914	-3.243	0.355
13	-2.877	0.527	-4.327	0.805
14	1.193	-2.399	-0.667	-2.309
15	-1.241	0.729	0.331	-1.403
16	0.274	-1.89	-2.309	0.89
17	-1.102	-2.078	1.206	-1.596
18	-1.89	0.475	-2.735	0.778
19	0.48	-4.327	0.813	-2.149
20	-1.684	-3.825	1.327	-3.825
21	-4.327	-3.492	-4.327	1.372
22	-3.243	1.251	-3.243	-0.851
23	0.48	0.355	-0.651	-0.831
24	-1.684	-0.935	-2.499	1.206
25	-1.782	-0.98	0.163	0.824
26	0.28	-1.949	-1.403	0.828
27	-1.303	-1.554	1.111	-0.737
28	-0.602	-1.596	1.056	-0.98
29	0.745	-1.403	-1.212	0.299
30	-1.052	-1.439	1.106	-0.935
31	0.448	-1.368	0.642	-1.272

Standard thresholds

P-value	Threshold
0.001	-2.34499
0.0005	-0.76794
0.0001	2.58601