ZN433.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN433.H12INVITRO.0.P.D
Gene (human)	ZNF433 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	vRRKWAYYRSWRYRGTChYbdbd
GC content	45.33%
Information content (bits; total / per base)	16.504 / 0.718
Data sources	ChIP-Seq
Aligned words	1003

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.965	0.968	0.959	0.962	0.963	0.964	7.64	7.784	438.464	441.509

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.224
HGNC	HGNC:20811
MGI
EntrezGene (human)	GeneID:163059 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN433_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N7K0 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN433.H12INVITRO.0.P.D.pcm
PWM	ZN433.H12INVITRO.0.P.D.pwm
PFM	ZN433.H12INVITRO.0.P.D.pfm
Alignment	ZN433.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN433.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN433.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN433.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN433.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN433.H12INVITRO.0.P.D_homer_format_0.001.txt ZN433.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN433.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	200.0	290.0	384.0	129.0
02	490.0	10.0	486.0	17.0
03	470.0	2.0	521.0	10.0
04	36.0	7.0	242.0	718.0
05	236.0	70.0	49.0	648.0
06	945.0	9.0	15.0	34.0
07	37.0	540.0	9.0	417.0
08	13.0	461.0	26.0	503.0
09	755.0	77.0	104.0	67.0
10	88.0	617.0	177.0	121.0
11	339.0	84.0	43.0	537.0
12	172.0	86.0	628.0	117.0
13	78.0	447.0	57.0	421.0
14	436.0	1.0	530.0	36.0
15	29.0	8.0	962.0	4.0
16	4.0	9.0	12.0	978.0
17	9.0	905.0	12.0	77.0
18	378.0	366.0	80.0	179.0
19	84.0	220.0	64.0	635.0
20	118.0	180.0	227.0	478.0
21	318.0	102.0	123.0	460.0
22	140.0	147.0	466.0	250.0
23	203.0	133.0	470.0	197.0

PFM

	A	C	G	T
01	0.199	0.289	0.383	0.129
02	0.489	0.01	0.485	0.017
03	0.469	0.002	0.519	0.01
04	0.036	0.007	0.241	0.716
05	0.235	0.07	0.049	0.646
06	0.942	0.009	0.015	0.034
07	0.037	0.538	0.009	0.416
08	0.013	0.46	0.026	0.501
09	0.753	0.077	0.104	0.067
10	0.088	0.615	0.176	0.121
11	0.338	0.084	0.043	0.535
12	0.171	0.086	0.626	0.117
13	0.078	0.446	0.057	0.42
14	0.435	0.001	0.528	0.036
15	0.029	0.008	0.959	0.004
16	0.004	0.009	0.012	0.975
17	0.009	0.902	0.012	0.077
18	0.377	0.365	0.08	0.178
19	0.084	0.219	0.064	0.633
20	0.118	0.179	0.226	0.477
21	0.317	0.102	0.123	0.459
22	0.14	0.147	0.465	0.249
23	0.202	0.133	0.469	0.196

PWM

	A	C	G	T
01	-0.224	0.144	0.424	-0.658
02	0.667	-3.069	0.658	-2.601
03	0.625	-4.216	0.728	-3.069
04	-1.901	-3.365	-0.035	1.048
05	-0.06	-1.258	-1.605	0.945
06	1.322	-3.158	-2.714	-1.955
07	-1.875	0.763	-3.158	0.506
08	-2.842	0.606	-2.209	0.693
09	1.098	-1.165	-0.87	-1.301
10	-1.035	0.896	-0.345	-0.721
11	0.3	-1.08	-1.731	0.758
12	-0.374	-1.057	0.914	-0.754
13	-1.153	0.575	-1.458	0.515
14	0.55	-4.528	0.745	-1.901
15	-2.106	-3.256	1.339	-3.786
16	-3.786	-3.158	-2.912	1.356
17	-3.158	1.279	-2.912	-1.165
18	0.408	0.376	-1.128	-0.334
19	-1.08	-0.13	-1.346	0.925
20	-0.746	-0.329	-0.099	0.642
21	0.236	-0.89	-0.705	0.604
22	-0.577	-0.529	0.617	-0.003
23	-0.21	-0.628	0.625	-0.239

Standard thresholds

P-value	Threshold
0.001	2.45491
0.0005	3.66496
0.0001	6.20066