ZN431.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN431.H12INVIVO.0.P.C
Gene (human)	ZNF431 (GeneCards)
Gene synonyms (human)	KIAA1969
Gene (mouse)	Znf431
Gene synonyms (mouse)	Zfp431, Zfp932
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	15
Consensus	vRGGCTRGMWGhYdv
GC content	60.99%
Information content (bits; total / per base)	14.457 / 0.964
Data sources	ChIP-Seq
Aligned words	195

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.898	0.95	0.878	0.932	0.875	0.931	4.606	5.125	113.482	119.469

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF100-like {2.3.3.59} (TFClass)
TFClass ID	TFClass: 2.3.3.59.3
HGNC	HGNC:20809
MGI	MGI:1916754
EntrezGene (human)	GeneID:170959 (SSTAR profile)
EntrezGene (mouse)	GeneID:69504 (SSTAR profile)
UniProt ID (human)	ZN431_HUMAN
UniProt ID (mouse)	ZN431_MOUSE
UniProt AC (human)	Q8TF32 (TFClass)
UniProt AC (mouse)	E9QAG8 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN431.H12INVIVO.0.P.C.pcm
PWM	ZN431.H12INVIVO.0.P.C.pwm
PFM	ZN431.H12INVIVO.0.P.C.pfm
Alignment	ZN431.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN431.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN431.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN431.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN431.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN431.H12INVIVO.0.P.C_homer_format_0.001.txt ZN431.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN431.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	58.0	52.0	76.0	9.0
02	54.0	6.0	131.0	4.0
03	6.0	1.0	181.0	7.0
04	4.0	0.0	188.0	3.0
05	2.0	188.0	1.0	4.0
06	4.0	0.0	0.0	191.0
07	116.0	3.0	75.0	1.0
08	6.0	17.0	171.0	1.0
09	152.0	25.0	15.0	3.0
10	124.0	21.0	9.0	41.0
11	19.0	1.0	174.0	1.0
12	37.0	92.0	28.0	38.0
13	21.0	138.0	1.0	35.0
14	48.0	30.0	32.0	85.0
15	48.0	37.0	91.0	19.0

PFM

	A	C	G	T
01	0.297	0.267	0.39	0.046
02	0.277	0.031	0.672	0.021
03	0.031	0.005	0.928	0.036
04	0.021	0.0	0.964	0.015
05	0.01	0.964	0.005	0.021
06	0.021	0.0	0.0	0.979
07	0.595	0.015	0.385	0.005
08	0.031	0.087	0.877	0.005
09	0.779	0.128	0.077	0.015
10	0.636	0.108	0.046	0.21
11	0.097	0.005	0.892	0.005
12	0.19	0.472	0.144	0.195
13	0.108	0.708	0.005	0.179
14	0.246	0.154	0.164	0.436
15	0.246	0.19	0.467	0.097

PWM

	A	C	G	T
01	0.17	0.063	0.435	-1.579
02	0.1	-1.923	0.972	-2.242
03	-1.923	-3.073	1.292	-1.795
04	-2.242	-3.637	1.33	-2.451
05	-2.714	1.33	-3.073	-2.242
06	-2.242	-3.637	-3.637	1.346
07	0.852	-2.451	0.422	-3.073
08	-1.923	-1.005	1.236	-3.073
09	1.119	-0.643	-1.121	-2.451
10	0.917	-0.808	-1.579	-0.168
11	-0.902	-3.073	1.253	-3.073
12	-0.267	0.623	-0.535	-0.242
13	-0.808	1.023	-3.073	-0.321
14	-0.015	-0.469	-0.407	0.545
15	-0.015	-0.267	0.612	-0.902

Standard thresholds

P-value	Threshold
0.001	3.57371
0.0005	4.64016
0.0001	6.86811