ZN430.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN430.H12INVIVO.0.P.C
Gene (human)	ZNF430 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	CACRTCTTACATGGYGGCAGGCA
GC content	53.83%
Information content (bits; total / per base)	37.487 / 1.63
Data sources	ChIP-Seq
Aligned words	897

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.964	0.971	0.962	0.969	0.961	0.968	19.174	19.423	674.97	793.027

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF100-like {2.3.3.59} (TFClass)
TFClass ID	TFClass: 2.3.3.59.2
HGNC	HGNC:20808
MGI
EntrezGene (human)	GeneID:80264 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN430_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9H8G1 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN430.H12INVIVO.0.P.C.pcm
PWM	ZN430.H12INVIVO.0.P.C.pwm
PFM	ZN430.H12INVIVO.0.P.C.pfm
Alignment	ZN430.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN430.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN430.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN430.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN430.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN430.H12INVIVO.0.P.C_homer_format_0.001.txt ZN430.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN430.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	17.0	869.0	6.0	5.0
02	891.0	3.0	3.0	0.0
03	6.0	719.0	15.0	157.0
04	446.0	6.0	426.0	19.0
05	3.0	13.0	3.0	878.0
06	6.0	841.0	0.0	50.0
07	7.0	25.0	1.0	864.0
08	1.0	45.0	1.0	850.0
09	848.0	46.0	3.0	0.0
10	4.0	870.0	0.0	23.0
11	891.0	1.0	4.0	1.0
12	6.0	25.0	12.0	854.0
13	2.0	0.0	895.0	0.0
14	0.0	1.0	896.0	0.0
15	21.0	339.0	0.0	537.0
16	134.0	1.0	762.0	0.0
17	0.0	1.0	894.0	2.0
18	1.0	888.0	1.0	7.0
19	853.0	12.0	3.0	29.0
20	62.0	1.0	827.0	7.0
21	145.0	13.0	728.0	11.0
22	30.0	857.0	3.0	7.0
23	849.0	1.0	46.0	1.0

PFM

	A	C	G	T
01	0.019	0.969	0.007	0.006
02	0.993	0.003	0.003	0.0
03	0.007	0.802	0.017	0.175
04	0.497	0.007	0.475	0.021
05	0.003	0.014	0.003	0.979
06	0.007	0.938	0.0	0.056
07	0.008	0.028	0.001	0.963
08	0.001	0.05	0.001	0.948
09	0.945	0.051	0.003	0.0
10	0.004	0.97	0.0	0.026
11	0.993	0.001	0.004	0.001
12	0.007	0.028	0.013	0.952
13	0.002	0.0	0.998	0.0
14	0.0	0.001	0.999	0.0
15	0.023	0.378	0.0	0.599
16	0.149	0.001	0.849	0.0
17	0.0	0.001	0.997	0.002
18	0.001	0.99	0.001	0.008
19	0.951	0.013	0.003	0.032
20	0.069	0.001	0.922	0.008
21	0.162	0.014	0.812	0.012
22	0.033	0.955	0.003	0.008
23	0.946	0.001	0.051	0.001

PWM

	A	C	G	T
01	-2.492	1.349	-3.379	-3.518
02	1.374	-3.873	-3.873	-4.89
03	-3.379	1.16	-2.605	-0.353
04	0.684	-3.379	0.638	-2.39
05	-3.873	-2.732	-3.873	1.359
06	-3.379	1.316	-4.89	-1.475
07	-3.257	-2.136	-4.427	1.343
08	-4.427	-1.577	-4.427	1.327
09	1.325	-1.555	-3.873	-4.89
10	-3.68	1.35	-4.89	-2.214
11	1.374	-4.427	-3.68	-4.427
12	-3.379	-2.136	-2.803	1.332
13	-4.112	-4.89	1.378	-4.89
14	-4.89	-4.427	1.38	-4.89
15	-2.298	0.411	-4.89	0.869
16	-0.51	-4.427	1.218	-4.89
17	-4.89	-4.427	1.377	-4.112
18	-4.427	1.371	-4.427	-3.257
19	1.33	-2.803	-3.873	-1.996
20	-1.266	-4.427	1.3	-3.257
21	-0.432	-2.732	1.172	-2.879
22	-1.964	1.335	-3.873	-3.257
23	1.326	-4.427	-1.555	-4.427

Standard thresholds

P-value	Threshold
0.001	-15.09759
0.0005	-12.81814
0.0001	-7.91784